UNIT 13.13 Analyzing Shotgun Proteomic Data with PatternLab for Proteomics
Published Online: 1 JUN 2010
Copyright © 2010 by John Wiley & Sons, Inc.
Lab Protocol Title
Current Protocols in Bioinformatics
How to Cite
Carvalho, P. C., Yates III, J. R. and Barbosa, V. C. 2010. Analyzing Shotgun Proteomic Data with PatternLab for Proteomics. Current Protocols in Bioinformatics. 30:13.13:13.13.1–13.13.15.
- Published Online: 1 JUN 2010
- Published Print: JUN 2010
PatternLab for proteomics is a one-stop shop computational environment for analyzing shotgun proteomic data. Its modules provide means to pinpoint proteins/peptides that are differentially expressed and those that are unique to a state. It can also cluster the ones that share similar expression profiles in time-course experiments, as well as help in interpreting results according to Gene Ontology. PatternLab is user-friendly, simple, and provides a graphical user interface. Curr. Protoc. Bioinform. 30:13.13.1-13.13.15. © 2010 by John Wiley & Sons, Inc.
- shotgun proteomics;
- label-free proteomic analysis;
- label-based proteomic analysis