Computational Methods for the Analysis of Genome Sequence Data

  1. Cecilia Saccone,
  2. Graziano Pesole

Published Online: 28 JAN 2005

DOI: 10.1002/0471722723.ch6

Book Title

Handbook of Comparative Genomics: Principles and Methodology

Handbook of Comparative Genomics: Principles and Methodology

Additional Information

How to Cite

Saccone, C. and Pesole, G. (2005) Computational Methods for the Analysis of Genome Sequence Data, in Handbook of Comparative Genomics: Principles and Methodology, John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/0471722723.ch6

Publication History

  1. Published Online: 28 JAN 2005
  2. Published Print: 24 JAN 2003

ISBN Information

Print ISBN: 9780471391289

Online ISBN: 9780471722724

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CHAPTER TOOLS

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Keywords:

  • analysis of genome sequence data;
  • sequence assembly methods;
  • alignment algorithms;
  • alignment profiles

Summary

The prelims comprise:

  • Introduction

  • Dot-Plot Matrix

  • Sequence Pairwise Alignment

  • Database Searching

  • Multiple Alignment

  • Alignment Profiles to Recognize Distantly Related Protein or Protein Modules

  • Methods for Sequence Assembly

  • Linguistic Analysis of Biosequences

  • Prediction of RNA Secondary Structures

  • Protein Sequence Analysis

  • Evolutionary and Phylogenetic Analysis

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