SEARCH

SEARCH BY CITATION

References

  • Abell, G. C. J., D. J. Ross, J. P. Keane, J. M. Oakes, B. D. Eyre, S. S. Robert, and J. K. Volkman (2013), Nitrifying and denitrifying microbial communities and their relationship to nutrient fluxes and sediment geochemistry in the Derwent Estuary, Tasmania, Aquat. Microb. Ecol., 70, 6375.
  • An, S., and S. B. Joye (2001), Enhancement of coupled nitrification-denitrification by benthic photosynthesis in shallow estuarine sediments, Limnol. Oceanogr., 46, 6274.
  • Asmus, R. (1986), Nutrient flux in short-term enclosures of intertidal sand communities, OPHELIA, 26, 118.
  • Banks, J. L., D. J. Ross, M. J. Keough, C. K. Macleod, J. Keane, and B. D. Eyre (2013), Influence of a bioturbating, metal-tolerant polychaete on benthic metabolism, denitrification and nitrogen regeneration in metal contaminated sediments, Mar. Pollut. Bull., 68, 3037.
  • Benner, R., M. L. Fogel, E. K. Sprague, and R. E. Hodson (1987), Depletion of 13C in lignin and its implications for stable carbon isotope studies, Nature, 329, 708710.
  • Bishop, M. J., and B. P. Kelaher (2008), Non-additive, identity-dependent effects of detrital species mixing on soft-sediment communities, Oikos, 117, 531542, doi:10.1111/j.2008.0030-1299.16418.x.
  • Borum, J., and K. Sand-Jensen (1996), Is total primary production in shallow coastal marine waters stimulated by nitrogen loading?, Oikos, 76, 406410.
  • Brettar, I., and G. Rheinheimer (1992), Influence of carbon availability on denitrification in the central Baltic Sea, Limnol. Oceanogr., 37, 11461163.
  • Caffrey, J. M., N. P. Sloth, H. F. Kasper, and T. H. Blacknburn (1993), Effect of organic loading on nitrification and denitrification in a marine sediment microcosm, FEMS Microbiol. Ecol., 12, 159167.
  • Canfield, D. E., E. Kristensen, and B. Thamdrup (2005), Aquatic Geomicrobiology, Elsevier Academic Press, San Diego, Calif.
  • Cloern, J. E. (2001), Our evolving conceptual model of the coastal eutrophication problem, Mar. Ecol. Prog. Ser., 210, 223253.
  • Cornwell, J. C., W. M. Kemp, and T. M. Kana (1999), Denitrification in coastal ecosystems: Methods, environmental controls, and ecosystem level controls, a review, Aquat. Ecol., 33, 4154.
  • Dahllof, I., and I. M. Karle (2005), Effect on marine sediment nitrogen fluxes caused by organic matter enrichment with varying organic carbon structure and nitrogen content, Mar. Chem., 94, 1726.
  • Eyre, B. D., and A. J. P. Ferguson (2005), Benthic metabolism and nitrogen cycling in a sub tropical east Australian estuary (Brunswick): Temporal variability and controlling factors, Limnol. Oceanogr., 50, 8196.
  • Eyre, B. D., and A. J. P. Ferguson (2009), Denitrification efficiency for defining critical loads of carbon in shallow coastal ecosystems, Hydrobiologia, 629, 137146.
  • Eyre, B. D., A. J. P. Ferguson, A. Webb, D. Maher, and J. M. Oakes (2011a), Denitrification, N-fixation and nitrogen and phosphorus fluxes in different benthic habitats and their contribution to the nitrogen and phosphorus budgets of a shallow oligotrophic sub-tropical coastal system (southern Moreton Bay, Australia), Biogeochemistry, 102, 111133, doi:10.1007/s10533-010-9425-6.
  • Eyre, B. D., R. N. Glud, and N. Pattern (2008), Coral mass spawning—A natural large-scale nutrient enrichment experiment, Limnol. Oceanogr., 53, 9971013.
  • Eyre, B. D., and D. Maher (2010), Structure and function of warm temperate east Australian coastal lagoons: implications for natural and anthropogenic change, in Coastal Lagoons: Critical Habitats of Environmental Change, edited by M. J. Kennish and H. W. Paerl, pp. 457481, CRC Press, Boca Raton, Fla.
  • Eyre, B. D., D. Maher, J. M. Oakes, D. V. Erler, and T. Glasby (2011b), Differences in benthic metabolism, nutrient fluxes and denitrification in Caulerpa taxifolia communities compared to uninvaded sediment and seagrass (Zostera capricorni), Limnol. Oceanogr., 56, 17371750.
  • Eyre, B. D., and L. McKee (2002), Carbon, nitrogen and phosphorus budgets for a shallow sub-tropical coastal embayment (Moreton Bay, Australia), Limnol. Oceanogr., 47, 10431055.
  • Eyre, B. D., S. Rysgaard, T. Dalsgaard, and P. B. Christensen (2002), Comparison of isotope pairing and N2/Ar methods for measuring sediment denitrification rates—Assumptions, modifications and implications, Estuaries, 25, 10771087.
  • Eyre, B. D., I. R. Santos, and D. T. Maher (2013), Seasonal, daily and diel N2 effluxes in permeable carbonate sediments, Biogeosciences, 10, 115.
  • Fennel, K., et al. (2009), Modeling denitrification in aquatic sediments, Biogeochemistry, 93, 159178.
  • Ferguson, A. J. P., and B. D. Eyre (2010), Carbon and nitrogen cycling in a shallow productive sub-tropical coastal embayment (Western Moreton Bay, Australia): The importance of pelagic-benthic coupling, Ecosystems, 13, 11271144.
  • Ferguson, A. J. P., and B. D. Eyre (2013), Interaction of benthic microalgae and macrofauna in the control of benthic metabolism, nutrient fluxes and denitrification in a shallow sub-tropical coastal embayment (western Moreton Bay, Australia), Biogeochemistry, 112, 423440, doi:10.1007/s10533-012-9736-x.
  • Frederiksen, M. S., and R. N. Glud (2006), Oxygen dynamics in the rhizosphere of Zostera marina: A two-dimensional planar optode study, Limnol. Oceanogr., 51, 10721083.
  • Fulweiler, R. W., S. M. Brown, S. W. Nixon, and B. D. Jenkins (2013), Evidence and a conceptual model in heterotrophic marine sediments, Mar. Ecol. Prog. Ser., 482, 5768.
  • Fulweiler, R. W., S. W. Nixon, B. A. Buckley, and S. L. Granger (2008), Net sediment N2 fluxes in a coastal marine system—Experimental manipulations and a conceptual model, Ecosystems, 11, 11681180.
  • Glud, R. N., B. D. Eyre, and N. Patten (2008), Biogeochemical responses to coral mass-spawning on the Great Barrier Reef: Effects on respiration and primary production, Limnol. Oceanogr., 53, 10141024.
  • Gonneea, M. E., A. Paytan, and J. A. Herrera-Silveira (2004), Tracing organic matter sources and carbon burial in mangrove sediments over the past 160 years, Estuarine Coastal Shelf Sci., 61, 211227.
  • Joye, S. B., and J. T. Hollibaugh (1995), Sulfide inhibition of nitrification influences nitrogen regeneration in sediments, Science, 270, 623625.
  • Kelaher, B., M. J. Bishop, J. Potts, P. Scanes, and G. Skilbeck (2013), Detrital diversity influence estuarine ecosystem performance, Global Change Biol., 19, 19091918.
  • Kemp, W. M., P. Sampoyu, J. Caffrey, M. Mayer, and K. Henriksen (1990), Ammonium recycling versus denitrification in Chesapeake Bay sediments, Limnol. Oceanogr., 35, 15451563.
  • Kleinbaum, D. G., L. L. Kupper, A. Nizam, and K. E. Muller (2008), Applied Regression Analysis and Other Multivariate Methods, Thomson Brooks/Cole, Belmont, Calif.
  • Koike, I., and T. Sumi (1989), Nitrogen cycling in coastal sediments with special reference to ammonium metabolism, in Recent Advances in Microbial Ecology, edited by R. Maruyama, Y. Morita, and A. Uchida, pp. 365369, Japan Scientific Societies Press, Tokyo.
  • Lomstein, B. A., A. Jensen, J. Hansen, J. B. Andreasen, L. S. Hansen, J. Berntsen, and H. Kunzendorf (1998), Budgets of sediment nitrogen and carbon cycling in the shallow water of Knebel Vig, Denmark, Aquat. Microb. Ecol., 14, 6980.
  • Maher, D. T., and B. D. Eyre (2010), Benthic fluxes of dissolved organic carbon in three temperate Australian estuaries: Implications for global estimates of benthic DOC fluxes, J. Geophys. Res., 115, G04039, doi:10.1029/2010JG001433.
  • Maher, D., and B. D. Eyre (2011), Benthic metabolism in southeast Australian estuaries: Habitat importance, driving forces, and application of artificial neural network models, Mar. Ecol. Prog. Ser., 439, 97115, doi:10.3354/meps09336.
  • Maher, D., and B. D. Eyre (2012), Carbon budgets for three autotrophic Australian estuaries: Implications for global estimates of the coastal air-water CO2 flux, Global Biogeochem. Cycles, 26, GB1032, doi:10.1029/2011GB004075.
  • Marshall, J. D., J. R. Brooks, and K. Lajtha (2007), Sources of variation in the stable isotope composition of plants, in Stable Isotopes in Ecology and Environmental Science, 2nd ed., edited by R. H. Michener and K. Lajtha, pp. 2260, Blackwell Scientific, Oxford, U. K.
  • Mayor, D. J., B. Thornton, S. Hay, A. F. Zuur, G. W. Nicol, J. M. McWilliam, and U. F. M. Witte (2012), Resource quality affects carbon cycling in deep-sea sediments, The ISME Journal, 6, 17401748.
  • McGlathery, K. J., K. Sundback, and I. C. Anderson (2007), Eutrophication in shallow coastal bay and lagoons: The role of plant in the coastal filter, Mar. Ecol. Prog. Ser., 348, 118.
  • McLeod, E., G. L. Chmura, S. Bouillon, R. Salm, M. Bjork, C. M. Duarte, C. E. Lovelock, W. H. Schlesinger, and B. R. Silliman (2011), A blueprint for blue carbon: Toward an improved understanding of the role of vegetated coastal habitats in sequestering CO2, Front. Ecol. Environ., 9, 552560.
  • Michener, R. H., and D. M. Schell (1994), Stable isotope ratios as tracers in marine aquatic food webs, in Stable Isotopes in Ecology and Environmental Science, edited by K. Lajtha and R. H. Michener, pp. 138157, Blackwell Scientific, Oxford, U. K.
  • Moore, C., et al. (2004), Detritus, trophic dynamics and biodiversity, Ecol. Lett., 7, 584600, doi:10.1111/j.1461-0248.2004.00606.x.
  • Moore, T. N., and P. G. Fairweather (2006), Decay of multiple species of seagrass detritus is dominated by species identity, with an important influence of mixing litters, Oikos, 114, 329337, doi:10.1111/j.2006.0030-1299.14576.x.
  • Nielsen, L. B., K. Finster, D. T. Welsh, A. Donelly, R. A. Herbert, R. de Wit, and B. A. Lomstein (2001), Sulfate reduction and nitrogen fixation rates associated with roots, rhizomes and sediments from Zostera noltii and Spartina maritima meadows, Environ. Microbiol., 3, 6371.
  • Nixon, S. W., R. W. Fulweiler, B. A. Buckley, S. L. Granger, B. L. Nowicki, and K. M. Henry (2009), The impact of changing climate on phenology, productivity and benthic-pelagic coupling in Narragansett Bay, Estuarine Coastal Shelf Sci., 82, 118.
  • Oakes, J. M., B. D. Eyre, and D. J. Ross (2011), Short-term enhancement, and long-term suppression, of denitrification in estuarine sediments receiving primary- and secondary-treated paper and pulp mill discharge, Environ. Sci. Technol., 45, 34003406.
  • Peterson, B. J. (1999), Stable isotopes as tracers of organic matter input and transfer in benthic food webs: A review, Acta Oecological., 20, 479487.
  • Piehler, M. F., and A. Smyth (2011), Habitat-specific distinctions in estuarine denitrification affect both ecosystem function and services, Ecosphere, 2, 116.
  • Risgaard-Petersen, N., T. Dalsgaard, S. Rysgaard, P. B. Christensen, J. Borum, K. McGlathery, and L. P. Nielsen (1998), Nitrogen balance of a temperate eelgrass Zostera marina bed, Mar. Ecol. Prog. Ser., 174, 281291.
  • Risgaard-Petersen, N., and L. D. M. Ottosen (2000), Nitrogen cycling in two temperate Zostera marina beds: Seasonal variation, Mar. Ecol. Prog. Ser., 198, 93107.
  • Risgaard-Petersen, N., S. Rysgaard, L. P. Nielsen, and N. P. Revesbeck (1994), Diurnal variation of denitrification and nitrification in sediment colonized by benthic microphytes, Limnol. Oceanogr., 39, 573579.
  • Rossi, F., M. Incera, M. Callier, and C. Olabarria (2011), Effects of detrital non-native and native macroalgae on the nitrogen and carbon cycling in intertidal sediments, Mar. Biol, 158, 27052715, doi:10.1007/s00227-011-1768-6.
  • Roy, P. S., R. J. Williams, A. R. Jones, I. Yassini, P. J. Gibbs, B. Coates, R. J. West, P. P. Scanes, J. P. Hudson, and S. Nichol (2001), Structure and function of south-east Australian estuaries, Estuarine Coastal Shelf Sci., 53, 351384.
  • Santos, I. R., B. D. Eyre, and M. Huettel (2012), The driving forces of pore water and groundwater flow in permeable coastal sediments, Estuarine Coastal Shelf Sci., 98, 115.
  • Seitzinger, S., and A. E. Giblin (1996), Estimating denitrification in North Atlantic continental shelf sediments, Biogeochemistry, 35, 235260.
  • Seitzinger, S., J. A. Harrison, J. K. Bohlke, A. F. Bouwman, R. Lowrance, B. Peterson, C. Tobias, and G. Van Drecht (2006), Denitrification across landscapes and waterscapes: A synthesis, Ecol. App., 16, 20642090.
  • Smyth, A. R., S. P. Thompson, K. N. Siporin, W. S. Gardner, M. J. McCarthy, and M. F. Piehler (2012), Assessing nitrogen dynamics throughout the estuarine landscape, Estuaries Coasts, doi:10.1007/s12237-012-9554-3.
  • Strauss, E. A., and G. A. Lamberti (2002), Effect of organic carbon quality on microbial decomposition of DOC and nitrification rates in stream sediments, Freshwater Biol., 47, 6574.
  • Sundbäck, K., A. Miles, and E. Goeransson (2000), Nitrogen fluxes, denitrification and the role of microphytobenthos in microtidal shallow-water sediments: An annual study, Mar. Ecol. Prog. Ser., 200, 5976.
  • Tupas, L., and I. Koike (1991), Simultaneous uptake and regeneration of ammonium by mixed assemblages of heterotrophic marine bacteria, Mar. Ecol. Prog. Ser., 70, 273282.
  • Van Duyl, F. C., W. Van Raaphorst, and A. J. Kop (1993), Benthic bacterial production and nutrient sediment-water exchange in sandy North Sea sediments, Mar. Ecol. Prog. Ser., 100, 8595.
  • Webb, A. P., and B. D. Eyre (2004), The effects of two benthic chamber stirring systems: A conventional rotor and a two dimensional flow system, over the diffusive boundary layer, solute efflux and passive flow through a macrofauna borrow, Estuaries, 27, 353362.
  • Welsh D. T., M. Bartoli, D. Nizzoli, G Castaldelli, S. A. Riou, and P. Viaroli (2000), Denitrification, nitrogen fixation, community primary production and inorganic-N and oxygen fluxes in an intertidal Zostera noltii meadow, Mar. Ecol. Prog. Ser., 208, 6577.