Chapter 14. Modeling Tools

  1. Dr. E. Klipp,
  2. Dr. R. Herwig,
  3. Dr. A. Kowald,
  4. C. Wierling,
  5. Prof. Dr. H. Lehrach

Published Online: 11 MAY 2005

DOI: 10.1002/3527603603.ch14

Book Title

Systems Biology in Practice: Concepts, Implementation and Application

Systems Biology in Practice: Concepts, Implementation and Application

Additional Information

How to Cite

Klipp, E., Herwig, R., Kowald, A., Wierling, C. and Lehrach, H. (2005) Modeling Tools, in Systems Biology in Practice: Concepts, Implementation and Application, Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, FRG. doi: 10.1002/3527603603.ch14

Author Information

  1. MPI für Molekulare Genetik, Ihnestraße 73, 14195 Berlin, Germany

Publication History

  1. Published Online: 11 MAY 2005
  2. Published Print: 17 FEB 2005

ISBN Information

Print ISBN: 9783527310784

Online ISBN: 9783527603602

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CHAPTER TOOLS

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Keywords:

  • modeling tools;
  • modeling and visualization;
  • Mathematica;
  • Matlab;
  • model exchange languages;
  • data formats

Summary

This chapter contains sections titled:

  • Modeling and Visualization

    • Mathematica and Matlab

      • Mathematica Example

      • Matlab Example

    • Gepasi

    • E-Cell

    • PyBioS

    • Systems Biology Workbench

      • JDesigner

      • CellDesigner

    • Petri Nets

    • STOCKS 2

    • Genetic Programming

  • Model Exchange Languages, Data Formats

    • Introduction to XML

    • Systems Biology Markup Language

    • MathML

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