4. Bioinformatics Analyses of Arabidopsis thaliana Tiling Array Expression Data

  1. Xiaohua Hu5 and
  2. Yi Pan6
  1. Trupti Joshi1,
  2. Jinrong Wan2,
  3. Curtis J. Palm3,
  4. Kara Juneau3,
  5. Ron Davis3,
  6. Audrey Southwick3,
  7. Katrina M. Ramonell4,
  8. Gary Stacey2 and
  9. Dong Xu1

Published Online: 23 MAY 2007

DOI: 10.1002/9780470124642.ch4

Knowledge Discovery in Bioinformatics: Techniques, Methods, and Applications

Knowledge Discovery in Bioinformatics: Techniques, Methods, and Applications

How to Cite

Joshi, T., Wan, J., Palm, C. J., Juneau, K., Davis, R., Southwick, A., Ramonell, K. M., Stacey, G. and Xu, D. (2007) Bioinformatics Analyses of Arabidopsis thaliana Tiling Array Expression Data, in Knowledge Discovery in Bioinformatics: Techniques, Methods, and Applications (eds X. Hu and Y. Pan), John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/9780470124642.ch4

Editor Information

  1. 5

    College of Information Science and Technology, Drexel University, Philadelphia, PA 19104, USA

  2. 6

    Department of Computer Science, Georgia State University, Atlanta, GA 30302-4110, USA

Author Information

  1. 1

    Department of Computer Science and Christopher Bond Life Sciences Center, University of Missouri–Columbia, Columbia, MO 65211-2060, USA

  2. 2

    Divisions of Plant Science and Biochemistry, Department of Molecular Microbiology and Immunology, Christopher S. Bond Life Sciences Center, University of Missouri–Columbia, Columbia, MO 65211-2060, USA

  3. 3

    Stanford Genome Technology Center, Palo Alto, CA 94304, USA

  4. 4

    Department of Biological Sciences, University of Alabama, Tuscaloosa, AL 35487-0344, USA

Publication History

  1. Published Online: 23 MAY 2007
  2. Published Print: 25 MAY 2007

ISBN Information

Print ISBN: 9780471777960

Online ISBN: 9780470124642

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Keywords:

  • tiling array design and data description;
  • bioinformatic Arabidopsis thaliana analyses tiling array;
  • antisense regulation identification

Summary

This chapter contains sections titled:

  • Tiling Array Design and Data Description

  • Ontology Analyses

  • Antisense Regulation Identification

  • Correlated Expression Between Two DNA Strands

  • Identification of Nonprotein Coding mRNA

  • Summary

  • Acknowledgments

  • References