14. Recent Advances in Solving the Protein Threading Problem

  1. El-Ghazali Talbi5 and
  2. Albert Y. Zomaya6
  1. Rumen Andonov1,
  2. Guillaume Collet1,
  3. J.-F. Gibrat2,
  4. A. Marin1,
  5. Vincent Poirriez3 and
  6. N. Yanev4

Published Online: 30 APR 2007

DOI: 10.1002/9780470191637.ch14

Grid Computing for Bioinformatics and Computational Biology

Grid Computing for Bioinformatics and Computational Biology

How to Cite

Andonov, R., Collet, G., Gibrat, J.-F., Marin, A., Poirriez, V. and Yanev, N. (2007) Recent Advances in Solving the Protein Threading Problem, in Grid Computing for Bioinformatics and Computational Biology (eds E.-G. Talbi and A. Y. Zomaya), John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/9780470191637.ch14

Editor Information

  1. 5

    LIFL, University of Lille, INRIA, CNRS, Lille, France

  2. 6

    School of Information Technology, University of Sydney, Sydney, Australia

Author Information

  1. 1

    IRISA, Campus de Beaulieu, Rennes, France

  2. 2

    Mathematics Information and Genome Unit, INRA, Joue-en-Josas, France

  3. 3

    LAMIH, University of Valenciennes, Valenciennes, France

  4. 4

    University of Sofia, Sofia, Bulgaria

Publication History

  1. Published Online: 30 APR 2007
  2. Published Print: 3 DEC 2007

ISBN Information

Print ISBN: 9780471784098

Online ISBN: 9780470191637

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Keywords:

  • fold recognition-oriented search tool (FROST) method;
  • job yield distribution environment (JYDE) system;
  • mixed integer programming (MIP)

Summary

This chapter contains sections titled:

  • Introduction

  • Frost: A Fold Recognition Method

  • Frost: A Computer Science Vision

  • Dividing Frost into Modules for Distribution over a Cluster

  • Computational Experiments

  • Future Research Directions

  • Conclusion

  • References