6. Multiple Sequence Alignment and Phylogenetic Inference

  1. El-Ghazali Talbi3 and
  2. Albert Y. Zomaya4
  1. Denis Trystram1 and
  2. Jaroslaw Zola2

Published Online: 30 APR 2007

DOI: 10.1002/9780470191637.ch6

Grid Computing for Bioinformatics and Computational Biology

Grid Computing for Bioinformatics and Computational Biology

How to Cite

Trystram, D. and Zola, J. (2007) Multiple Sequence Alignment and Phylogenetic Inference, in Grid Computing for Bioinformatics and Computational Biology (eds E.-G. Talbi and A. Y. Zomaya), John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/9780470191637.ch6

Editor Information

  1. 3

    LIFL, University of Lille, INRIA, CNRS, Lille, France

  2. 4

    School of Information Technology, University of Sydney, Sydney, Australia

Author Information

  1. 1

    ID-IMAG, Grenoble, France

  2. 2

    Institute of Computer & Information Sciences, Czestochowa University of Technology, Poland

Publication History

  1. Published Online: 30 APR 2007
  2. Published Print: 3 DEC 2007

ISBN Information

Print ISBN: 9780471784098

Online ISBN: 9780470191637

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Keywords:

  • multiple sequence alignment (MSA);
  • sum of pairs (SP) function;
  • distance-based methods and criteria-based methods

Summary

This chapter contains sections titled:

  • Introduction

  • Multiple Sequence Alignment and Phylogeny

  • Generic Scheme for GTA Problem

  • Parallel Phyltree and its Extensions

  • Experimental Results

  • Alignport—A Grid Environment for MSA

  • Conclusion

  • Acknowledgments

  • References