11. Algorithms for Multiplex PCR Primer Set Selection with Amplification Length Constraints

  1. Ion I. Mǎndoiu1 and
  2. Alexander Zelikovsky2
  1. K. M. Konwar,
  2. I. I. Mǎndoiu,
  3. A. C. Russell and
  4. A. A. Shvartsman

Published Online: 9 AUG 2007

DOI: 10.1002/9780470253441.ch11

Bioinformatics Algorithms: Techniques and Applications

Bioinformatics Algorithms: Techniques and Applications

How to Cite

Konwar, K. M., Mǎndoiu, I. I., Russell, A. C. and Shvartsman, A. A. (2008) Algorithms for Multiplex PCR Primer Set Selection with Amplification Length Constraints, in Bioinformatics Algorithms: Techniques and Applications (eds I. I. Mǎndoiu and A. Zelikovsky), John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/9780470253441.ch11

Editor Information

  1. 1

    Department of Computer Science and Engineering, University of Connecticut, Storrs, Connecticut, USA

  2. 2

    Department of Computer Science, Georgia State University, Atlanta, GA, USA

Author Information

  1. Department of Computer Science and Engineering, University of Connecticut, Storrs, Connecticut, USA

Publication History

  1. Published Online: 9 AUG 2007
  2. Published Print: 8 FEB 2008

ISBN Information

Print ISBN: 9780470097731

Online ISBN: 9780470253441

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Keywords:

  • single nucleotide polymorphism (SNP);
  • polymerase chain reaction (PCR);
  • double-stranded amplification target

Summary

This chapter contains sections titled:

  • Introduction

  • Notations and Problem Formulation

  • Integer Program Formulations for MPSS-L

  • A Greedy Algorithm

  • Experimental Results

  • Conclusions

  • Acknowledgments

  • References