Chapter 9. Bioinformatics in MS-Based Proteomics

  1. Ganesh Kumar Agrawal2 and
  2. Randeep Rakwal3,4,5
  1. Jacques Colinge

Published Online: 7 JAN 2008

DOI: 10.1002/9780470369630.ch9

Plant Proteomics: Technologies, Strategies, and Applications

Plant Proteomics: Technologies, Strategies, and Applications

How to Cite

Colinge, J. (2008) Bioinformatics in MS-Based Proteomics, in Plant Proteomics: Technologies, Strategies, and Applications (eds G. K. Agrawal and R. Rakwal), John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/9780470369630.ch9

Editor Information

  1. 2

    Research Laboratory for Biotechnology and Biochemistry (RLABB), Kathmandu, Nepal

  2. 3

    Research Laboratory for Agricultural Biotechnology and Biochemistry (RLABB), Kathmandu, Nepal

  3. 4

    Health Technology, Research Center (HTRC), Ibaraki, Japan

  4. 5

    National Institute of Advanced Industrial Science and Technology (AIST) Tsukuba West, Ibaraki, Japan

Author Information

  1. Ce-M-M Research Center for Molecular Medicine, Austrian Academy of Science, Director's Group, Vienna, Austria

Publication History

  1. Published Online: 7 JAN 2008
  2. Published Print: 27 AUG 2008

ISBN Information

Print ISBN: 9780470069769

Online ISBN: 9780470369630

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Keywords:

  • bioinformatics in MS-based proteomics;
  • scoring problem Sequest approach - heuristic scoring functions;
  • peptide de novo sequencing or sequence tag prediction

Summary

This chapter contains sections titled:

  • Introduction

  • Database Searching

  • Peptide De Novo Sequencing

  • Conclusions and Five-Year Viewpoint

  • References