3. Sequence-Based Analysis of Bacterial Population Structures

  1. D. Ashley Robinson2,
  2. Daniel Falush3 and
  3. Edward J. Feil4
  1. Xavier Didelot

Published Online: 9 APR 2010

DOI: 10.1002/9780470600122.ch3

Bacterial Population Genetics in Infectious Disease

Bacterial Population Genetics in Infectious Disease

How to Cite

Didelot, X. (2010) Sequence-Based Analysis of Bacterial Population Structures, in Bacterial Population Genetics in Infectious Disease (eds D. A. Robinson, D. Falush and E. J. Feil), John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/9780470600122.ch3

Editor Information

  1. 2

    Department of Microbiology, University of Mississippi Medical Center, Jackson, MS, USA

  2. 3

    Department of Microbiology, University College Cork, National University of Ireland, Cork Ireland

  3. 4

    Department of Biology and Biochemistry, University of Bath, Bath, UK

Author Information

  1. Department of Statistics, University of Warwick, Coventry, UK

Publication History

  1. Published Online: 9 APR 2010
  2. Published Print: 24 MAR 2010

ISBN Information

Print ISBN: 9780470424742

Online ISBN: 9780470600122

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Keywords:

  • sequence-based analysis, of bacterial population structure;
  • genomic sequence alignment and types - pairwise and multiple;
  • Unweighted Pair Group Method (UPGMA) and bootstrapping - phylogenetic tree construction

Summary

This chapter contains sections titled:

  • Introduction

  • Alignments

  • Phylogenetic Methods

  • Measures of Uncertainty

  • Beyond the Tree Model

  • References