Chapter 2. First Steps of Protein Structure Prediction
- Janusz M. Bujnicki1,2
Published Online: 18 DEC 2008
DOI: 10.1002/9780470741894.ch2
Copyright © 2009 John Wiley & Sons, Ltd
Book Title
Prediction of Protein Structures, Functions, and Interactions
Additional Information
How to Cite
Majorek, K., Kozłowski, Ł., Jąkalski, M. and Bujnicki, J. M. (2008) First Steps of Protein Structure Prediction, in Prediction of Protein Structures, Functions, and Interactions (ed J. M. Bujnicki), John Wiley & Sons, Ltd, Chichester, UK. doi: 10.1002/9780470741894.ch2
Editor Information
- 1
Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, ul. Ks. Trojdena 4, 02-109 Warsaw, Poland
- 2
Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, ul. Umultowska 89, 61-614 Poznan, Poland
Publication History
- Published Online: 18 DEC 2008
- Published Print: 19 DEC 2008
ISBN Information
Print ISBN: 9780470517673
Online ISBN: 9780470741894
- Summary
- Chapter
Keywords:
- protein structure prediction steps;
- secondary structure prediction and knowledge-based structure prediction;
- Dictionary of Secondary Structure in Proteins (DSSP);
- secondary structure assignment - STRIDE;
- P-SEA, SECSTR, KAKSI, SEGNO, PALSSE methods;
- secondary structure prediction software;
- supersecondary structure prediction;
- multiple sequence information
Summary
This chapter contains sections titled:
Introduction
Definition of Secondary Structure and Its Assignment for Known Protein Structures
Prediction of Secondary Structure and Solvent Accessibility for Water-soluble Proteins
Prediction of Secondary Structure for Transmembrane Proteins
Prediction of Supersecondary Structure
Disorder Prediction
Prediction of Long-range Contacts between Amino Acid Residues
Summary
Acknowledgements
References