Chapter 7. Prediction of Molecular Interactions from 3D-Structures: From Small Ligands to Large Protein Complexes
- Janusz M. Bujnicki4,5
Published Online: 18 DEC 2008
DOI: 10.1002/9780470741894.ch7
Copyright © 2009 John Wiley & Sons, Ltd
Book Title
Prediction of Protein Structures, Functions, and Interactions
Additional Information
How to Cite
Kinoshita, K., Kono, H. and Yura, K. (2008) Prediction of Molecular Interactions from 3D-Structures: From Small Ligands to Large Protein Complexes, in Prediction of Protein Structures, Functions, and Interactions (ed J. M. Bujnicki), John Wiley & Sons, Ltd, Chichester, UK. doi: 10.1002/9780470741894.ch7
Editor Information
- 4
Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, ul. Ks. Trojdena 4, 02-109 Warsaw, Poland
- 5
Laboratory of Bioinformatics, Institute of Molecular Biology and Biotechnology, Faculty of Biology, Adam Mickiewicz University, ul. Umultowska 89, 61-614 Poznan, Poland
Publication History
- Published Online: 18 DEC 2008
- Published Print: 19 DEC 2008
ISBN Information
Print ISBN: 9780470517673
Online ISBN: 9780470741894
- Summary
- Chapter
Keywords:
- protein–ligand interactions;
- 3D-structures and molecular interaction prediction;
- protein–DNA interactions;
- gene expression regulation;
- prediction methods - sequence-based and structure-based;
- naive Bayes classifier method in RNABindR;
- homologous interactions;
- protein-protein docking and ZDOCK algorithms
Summary
This chapter contains sections titled:
Introduction
Protein–Ligand Interactions
Protein–DNA Interactions
Protein–RNA Interactions
Protein–Protein Interactions
References