6. Structural Search in RNA Motif Databases

  1. Ujjwal Maulik1,
  2. Sanghamitra Bandyopadhyay2 and
  3. Jason T. L. Wang3
  1. Dongrong Wen and
  2. Jason T. L. Wang

Published Online: 25 AUG 2010

DOI: 10.1002/9780470872352.ch6

Computational Intelligence and Pattern Analysis in Biological Informatics

Computational Intelligence and Pattern Analysis in Biological Informatics

How to Cite

Wen, D. and Wang, J. T. L. (2010) Structural Search in RNA Motif Databases, in Computational Intelligence and Pattern Analysis in Biological Informatics (eds U. Maulik, S. Bandyopadhyay and J. T. L. Wang), John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/9780470872352.ch6

Editor Information

  1. 1

    Department of Computer Science and Engineering, Jadavpur University, Kolkata, India

  2. 2

    Machine Intelligence Unit, Indian Statistical Institute, Kolkata, India

  3. 3

    Department of Computer Science, New Jersey Institute of Technology, Newark, New Jersey, USA

Author Information

  1. Department of Computer Science, New Jersey Institute of Technology, Newark, New Jersey, USA

Publication History

  1. Published Online: 25 AUG 2010
  2. Published Print: 11 OCT 2010

ISBN Information

Print ISBN: 9780470581599

Online ISBN: 9780470872352

SEARCH

Keywords:

  • structure analysis - structural search in RNA motif databases;
  • RmotifDB supporting searching for “nearest neighbors” of RNA structural motifs - from its database;
  • search engine based on blockmatch

Summary

This chapter contains sections titled:

  • Introduction

  • The Search Engine on RmotifDB

  • The Search Engine Based on Blockmatch

  • Conclusion

  • Acknowledgments

  • References