7. Kernels on Protein Structures

  1. Ujjwal Maulik3,
  2. Sanghamitra Bandyopadhyay4 and
  3. Jason T. L. Wang5
  1. Sourangshu Bhattacharya1,
  2. Chiranjib Bhattacharyya1 and
  3. Nagasuma R. Chandra2

Published Online: 25 AUG 2010

DOI: 10.1002/9780470872352.ch7

Computational Intelligence and Pattern Analysis in Biological Informatics

Computational Intelligence and Pattern Analysis in Biological Informatics

How to Cite

Bhattacharya, S., Bhattacharyya, C. and Chandra, N. R. (2010) Kernels on Protein Structures, in Computational Intelligence and Pattern Analysis in Biological Informatics (eds U. Maulik, S. Bandyopadhyay and J. T. L. Wang), John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/9780470872352.ch7

Editor Information

  1. 3

    Department of Computer Science and Engineering, Jadavpur University, Kolkata, India

  2. 4

    Machine Intelligence Unit, Indian Statistical Institute, Kolkata, India

  3. 5

    Department of Computer Science, New Jersey Institute of Technology, Newark, New Jersey, USA

Author Information

  1. 1

    Department of Computer Science and Automation, Indian Institute of Science Bangalore, India

  2. 2

    Bioinformatics Center, Indian Institute of Science, Bangalore, India

Publication History

  1. Published Online: 25 AUG 2010
  2. Published Print: 11 OCT 2010

ISBN Information

Print ISBN: 9780470581599

Online ISBN: 9780470872352

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Keywords:

  • kernels on protein structures - defining kernels on protein structures using kernels on neighborhoods;
  • neighborhoods, subsets of residues of protein structure - compact in 3D space or in protein sequence space;
  • neighborhood kernels and different types of neighborhood kernels

Summary

This chapter contains sections titled:

  • Introduction

  • Kernels Methods

  • Protein Structures

  • Kernels on Neighborhoods

  • Kernels on Protein Structures

  • Experimental Results

  • Discussion and Conclusion

  • Appendix A

  • References