16. Ligand-Binding Residue Prediction

  1. Huzefa Rangwala1 and
  2. George Karypis2
  1. Chris Kauffman and
  2. George Karypis

Published Online: 7 SEP 2010

DOI: 10.1002/9780470882207.ch16

Introduction to Protein Structure Prediction: Methods and Algorithms

Introduction to Protein Structure Prediction: Methods and Algorithms

How to Cite

Kauffman, C. and Karypis, G. (2010) Ligand-Binding Residue Prediction, in Introduction to Protein Structure Prediction: Methods and Algorithms (eds H. Rangwala and G. Karypis), John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/9780470882207.ch16

Editor Information

  1. 1

    Department of Computer Science, George Mason University, Fairfax, VA 22030, USA

  2. 2

    Department of Computer Science, University of Minnesota Minneapolis, MN 55455, USA

Author Information

  1. Department of Computer Science, University of Minnesota Minneapolis, MN 55455, USA

Publication History

  1. Published Online: 7 SEP 2010
  2. Published Print: 12 NOV 2010

Book Series:

  1. Wiley Series on Bioinformatics: Computational Techniques and Engineering

Book Series Editors:

  1. Yi Pan and
  2. Albert Zomaya

ISBN Information

Print ISBN: 9780470470596

Online ISBN: 9780470882207

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Keywords:

  • ligand-binding residue prediction and ligand-binding prediction method evaluation;
  • prototype algorithms, basic ideas behind most sequence-based binding residue predictors;
  • homology modeling-accurate modeling of protein-ligand interactions - step in understanding biological processes

Summary

This chapter contains sections titled:

  • Introduction

  • Evaluation of Ligand-Binding Prediction Methods

  • Application: Homology Modeling of Binding Sites

  • Conclusion and Future Outlook

  • References