20. Algorithmic Issues in the Analysis of Chip-Seq Data
- Mourad Elloumi2,
- Albert Y. Zomaya3
Published Online: 23 DEC 2010
DOI: 10.1002/9780470892107.ch20
Copyright © 2011 John Wiley & Sons, Inc.
Book Title
Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications
Additional Information
How to Cite
Zambelli, F. and Pavesi, G. (2011) Algorithmic Issues in the Analysis of Chip-Seq Data, in Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications (eds M. Elloumi and A. Y. Zomaya), John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/9780470892107.ch20
Editor Information
- 2
Unit of Technologies of Information and Communication (UTIC) and University of Tunis-El Manar, Tunisia
- 3
School of Information Technologies, The University of Sydney, Australia
Publication History
- Published Online: 23 DEC 2010
- Published Print: 18 JAN 2011
ISBN Information
Print ISBN: 9780470505199
Online ISBN: 9780470892107
- Summary
- Chapter
- References
Keywords:
- algorithmic issues in Chip-Seq data analysis - the ChIP-Seq analysis pipeline;
- mapping and assembly with quality (MAQ) - one of the most successful tools, taking advantage of nucleotide-by-nucleotide quality scores, coming together with Solexa/Illumina tag sequences;
- next-generation sequencing techniques - new avenues in molecular biology, key roles bioinformatics plays in modern genomics
Summary
This chapter contains sections titled:
Introduction
Mapping Sequences on the Genome
Identifying Significantly Enriched Regions
Deriving Actual Transcription Factor Binding Sites
Conclusions
References