12. Comparison of Index Selection, BLUP, MAS, and Whole Genome Selection

  1. Zhanjiang (John) Liu
  1. Zhenmin Bao

Published Online: 10 DEC 2010

DOI: 10.1002/9780470958964.ch12

Next Generation Sequencing and Whole Genome Selection in Aquaculture

Next Generation Sequencing and Whole Genome Selection in Aquaculture

How to Cite

Bao, Z. (2011) Comparison of Index Selection, BLUP, MAS, and Whole Genome Selection, in Next Generation Sequencing and Whole Genome Selection in Aquaculture (ed Z. (. Liu), Wiley-Blackwell, Oxford, UK. doi: 10.1002/9780470958964.ch12

Editor Information

  1. The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849 USA

Author Information

  1. Key Lab of Marine Genetics and Breeding, Ministry of Education, College of Marine Life Science, Ocean University of China, Qingdao, China

Publication History

  1. Published Online: 10 DEC 2010
  2. Published Print: 28 JAN 2011

ISBN Information

Print ISBN: 9780813806372

Online ISBN: 9780470958964

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Keywords:

  • index selection comparison - BLUP, MAS, and whole genome selection;
  • genetic evaluation of breeding values - focus of quantitative genetics and breeding;
  • selection index-based selection - initial stage of breeding value estimation;
  • selection index method, in breeding programs - and aquaculture species;
  • selection index method defects;
  • Best Linear Unbiased Prediction (BLUP) - statistical method, basic principle combination of a linear statistical model methodology and quantitative genetics;
  • key to breeding value estimation with BLUP - proper mixed linear model, and system of equations;
  • conventional breeding selection - and two types of data, pedigree and phenotypic information;
  • linkage analysis and LD detection of QTLs;
  • dynamic traits and dynamic trait QTLs - QTLs detection, of observed value of quantitative traits

Summary

This chapter contains sections titled:

  • Selection Index-based Selection

  • Best Linear Unbiased Prediction (BLUP)

  • MAS

  • Genomic Selection

  • Summary

  • Acknowledgments

  • References