Protein Functional Motions: Basic Concepts and Computational Methodologies

  1. Tamiki Komatsuzaki4,5,
  2. R. Stephen Berry6 and
  3. David M. Leitner7
  1. Sotaro Fuchigami1,
  2. Hiroshi Fujisaki2,3,
  3. Yasuhiro Matsunaga2 and
  4. Akinori Kidera1,2

Published Online: 5 JUL 2011

DOI: 10.1002/9781118087817.ch2

Advancing Theory for Kinetics and Dynamics of Complex, Many-Dimensional Systems: Clusters and Proteins: Advances in Chemical Physics, Volume 145

Advancing Theory for Kinetics and Dynamics of Complex, Many-Dimensional Systems: Clusters and Proteins: Advances in Chemical Physics, Volume 145

How to Cite

Fuchigami, S., Fujisaki, H., Matsunaga, Y. and Kidera, A. (2011) Protein Functional Motions: Basic Concepts and Computational Methodologies, in Advancing Theory for Kinetics and Dynamics of Complex, Many-Dimensional Systems: Clusters and Proteins: Advances in Chemical Physics, Volume 145 (eds T. Komatsuzaki, R. S. Berry and D. M. Leitner), John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/9781118087817.ch2

Editor Information

  1. 4

    Molecule&Life Nonlinear Sciences Laboratory, Research Institute for Electronic Science, Hokkaido University, Kita 20 Nishi 10, Kita-ku, Sapporo 001-0020, Japan

  2. 5

    Core Research for Evolutional Science and Technology (CREST), Japan Science and Technology Agency (JST), Kawaguchi, Saitama 332-0012, Japan

  3. 6

    Department of Chemistry, The University of Chicago, 929 East 57th Street, Chicago, IL 60637, USA

  4. 7

    Department of Chemistry and Chemical Physics Program, University of Nevada, Reno, NV 89557-0216, USA

Author Information

  1. 1

    Department of Supramolecular Biology, Graduate School of Nanobioscience, Yokohama City University, 1-7-29 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan

  2. 2

    Molecular Scale Team, Integrated Simulation of Living Matter Group, Computational Science Research Program, RIKEN, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan

  3. 3

    Department of Physics, Nippon Medical School, 2-297-2 Kosugi-cho, Nakahara, Kawasaki, Kanagawa 211-0063, Japan

Publication History

  1. Published Online: 5 JUL 2011
  2. Published Print: 19 SEP 2011

ISBN Information

Print ISBN: 9780470643716

Online ISBN: 9781118087817

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Keywords:

  • protein functional motions - basic concepts and computational methodologies;
  • equilibrium dynamics of proteins - concepts, underlying protein functional motions;
  • nonequilibrium dynamics of proteins - protein function, transition to another equilibrium state

Summary

This chapter contains sections titled:

  • Introduction

  • Experiments on Protein Dynamics

  • Equilibrium Dynamics of Proteins

  • Nonequilibrium Dynamics of Proteins

  • Concluding Remarks

  • Acknowledgments

  • References