1. Functional Genomics Research in Aquaculture: Principles and General Approaches

  1. Marco Saroglia1 and
  2. Zhanjiang (John) Liu2
  1. Shikai Liu,
  2. Yu Zhang,
  3. Fanyue Sun,
  4. Yanliang Jiang,
  5. Ruijia Wang,
  6. Chao Li,
  7. Jiaren Zhang and
  8. Zhanjiang (john) Liu

Published Online: 11 JUN 2012

DOI: 10.1002/9781118350041.ch1

Functional Genomics in Aquaculture

Functional Genomics in Aquaculture

How to Cite

Liu, S., Zhang, Y., Sun, F., Jiang, Y., Wang, R., Li, C., Zhang, J. and Liu, Z. (2012) Functional Genomics Research in Aquaculture: Principles and General Approaches, in Functional Genomics in Aquaculture (eds M. Saroglia and Z. (. Liu), Wiley-Blackwell, Oxford, UK. doi: 10.1002/9781118350041.ch1

Editor Information

  1. 1

    Department of Biotechnology and Molecular Sciences, Animal Biotechnology and Aquaculture Unit, University of Insubria, Via J.H. Dunant 3 Varese I-21100, Italy

  2. 2

    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA

Author Information

  1. The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA

Publication History

  1. Published Online: 11 JUN 2012
  2. Published Print: 27 JUL 2012

ISBN Information

Print ISBN: 9780470960080

Online ISBN: 9781118350041

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Keywords:

  • functional genomics research in aquaculture, and general approaches;
  • functional inference on expression profiling, EST, BLAST and ORF;
  • gene function on positional analysis, GWAS, QTL, eQTL;
  • comparative genome pathway, epigenetic using ChIP, and gene expression;
  • gene function determination with ZFN;
  • genome mapping, sequencing “structural genomics” and “functional genomics”;
  • functional genomics, genome-wide using structural genomics;
  • data generation, management and data set mining;
  • RNA-Seq in aquaculture, DNA, mRNA, microarray and RNASeq complementary;
  • vertebrates and conserved synteny and orthology

Summary

This chapter contains sections titled:

  • Introduction

  • The Concept of Functional Genomics

  • Approaches to Functional Genomics

  • Functional Genomics Approaches Suitable for Aquaculture

  • Acknowledgments

  • References