2. Genomic Resources for Functional Genomics in Aquaculture Species

  1. Marco Saroglia1 and
  2. Zhanjiang (John) Liu2
  1. Jiaren Zhang,
  2. Yanliang Jiang,
  3. Fanyue Sun,
  4. Yu Zhang,
  5. Ruijia Wang,
  6. Chao Li,
  7. Shikai Liu and
  8. Zhanjiang (john) Liu

Published Online: 11 JUN 2012

DOI: 10.1002/9781118350041.ch2

Functional Genomics in Aquaculture

Functional Genomics in Aquaculture

How to Cite

Zhang, J., Jiang, Y., Sun, F., Zhang, Y., Wang, R., Li, C., Liu, S. and Liu, Z. (2012) Genomic Resources for Functional Genomics in Aquaculture Species, in Functional Genomics in Aquaculture (eds M. Saroglia and Z. (. Liu), Wiley-Blackwell, Oxford, UK. doi: 10.1002/9781118350041.ch2

Editor Information

  1. 1

    Department of Biotechnology and Molecular Sciences, Animal Biotechnology and Aquaculture Unit, University of Insubria, Via J.H. Dunant 3 Varese I-21100, Italy

  2. 2

    The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA

Author Information

  1. The Fish Molecular Genetics and Biotechnology Laboratory, Department of Fisheries and Allied Aquacultures and Program of Cell and Molecular Biosciences, Aquatic Genomics Unit, Auburn University, Auburn, AL 36849, USA

Publication History

  1. Published Online: 11 JUN 2012
  2. Published Print: 27 JUL 2012

ISBN Information

Print ISBN: 9780470960080

Online ISBN: 9781118350041

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Keywords:

  • genomic resources for functional genomics in aquaculture species;
  • genome resources, revealing gene functions on genomic scale;
  • DNA, and molecular markers used in aquaculture species;
  • gene expression with microarray, temporally or spatially;
  • SRA, in functional genomics studies, and storing of data;
  • EST to SNP and microsatellite, splicing, ESTs from aquaculture species;
  • SNP platforms, and SNP of Atlantic salmon, catfish, rainbow trout, guppy;
  • SNP discovery, genotyping in aquaculture, and related species;
  • ZFIN, cBARBEL, Fugu genome sequences, M Base, cGRASP;
  • whole genome sequence assemblies, as genome resources

Summary

This chapter contains sections titled:

  • Introduction

  • Polymorphic DNA Markers

  • Expressed Sequence Tags (ESTs)

  • Microarrays

  • Sequence Read Archive (SRA)

  • SNP Genotyping Platforms

  • Databases for Aquaculture Species

  • Whole Genome Sequence Assemblies

  • References