2. Special-Purpose Hardware for Computational Biology

  1. Krzysztof Iniewski
  1. Siddharth Srinivasan

Published Online: 6 NOV 2012

DOI: 10.1002/9781118468654.ch2

Embedded Systems: Hardware, Design, and Implementation

Embedded Systems: Hardware, Design, and Implementation

How to Cite

Srinivasan, S. (2012) Special-Purpose Hardware for Computational Biology, in Embedded Systems: Hardware, Design, and Implementation (ed K. Iniewski), John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/9781118468654.ch2

Editor Information

  1. CMOS Emerging Technologies Research, USA

Author Information

  1. Zymeworks Vancouver, British Columbia, Canada

Publication History

  1. Published Online: 6 NOV 2012
  2. Published Print: 14 DEC 2012

ISBN Information

Print ISBN: 9781118352151

Online ISBN: 9781118468654

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Keywords:

  • special-purpose hardware for computational biology;
  • molecular dynamics simulations on graphics processing units;
  • special-purpose hardware/network topologies for MD simulations;
  • quantum MC applications on field-programmable gate arrays;
  • CUDA and OpenCL, GPU computing and HPC programmers

Summary

This chapter contains sections titled:

  • Molecular Dynamics Simulations on Graphics Processing Units

  • Special-Purpose Hardware and Network Topologies for MD Simulations

  • Quantum MC Applications on Field-Programmable Gate Arrays

  • Conclusions and Future Directions

  • References