7. FPGA Coprocessing Solution for Real-Time Protein Identification Using Tandem Mass Spectrometry

  1. Krzysztof Iniewski
  1. Daniel Coca1,
  2. István Bogdán1 and
  3. Robert J. Beynon2

Published Online: 6 NOV 2012

DOI: 10.1002/9781118468654.ch7

Embedded Systems: Hardware, Design, and Implementation

Embedded Systems: Hardware, Design, and Implementation

How to Cite

Coca, D., Bogdán, I. and Beynon, R. J. (2012) FPGA Coprocessing Solution for Real-Time Protein Identification Using Tandem Mass Spectrometry, in Embedded Systems: Hardware, Design, and Implementation (ed K. Iniewski), John Wiley & Sons, Inc., Hoboken, NJ, USA. doi: 10.1002/9781118468654.ch7

Editor Information

  1. CMOS Emerging Technologies Research, USA

Author Information

  1. 1

    Department of Automatic Control and Systems Engineering, University of Sheffield, Sheffield, UK

  2. 2

    Protein Function Group, Institute of Integrative Biology, University of Liverpool, Liverpool, UK

Publication History

  1. Published Online: 6 NOV 2012
  2. Published Print: 14 DEC 2012

ISBN Information

Print ISBN: 9781118352151

Online ISBN: 9781118468654

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Keywords:

  • FPGA coprocessing for real-time using tandem MS;
  • protein identification by sequence search using MS/MS data;
  • reconfigurable computing platform;
  • FPGA implementation of MS/MS search engine;
  • search processor architecture

Summary

This chapter contains sections titled:

  • Introduction

  • Protein Identification by Sequence Database Searching Using MS/MS Data

  • Reconfigurable Computing Platform

  • FPGA Implementation of the MS/MS Search Engine

  • Summary

  • Acknowledgments

  • References