Chapter 7. Finding Repeats in Genome Sequences

  1. Prof. Dr. Thomas Lengauer
  1. Brian J. Haas,
  2. Steven L. Salzberg

Published Online: 5 FEB 2008

DOI: 10.1002/9783527619368.ch7

Book Title

Bioinformatics - From Genomes to Therapies

Bioinformatics - From Genomes to Therapies

Additional Information

How to Cite

Haas, B. J. and Salzberg, S. L. (2008) Finding Repeats in Genome Sequences, in Bioinformatics - From Genomes to Therapies (ed T. Lengauer), Wiley-VCH Verlag GmbH, Weinheim, Germany. doi: 10.1002/9783527619368.ch7

Editor Information

  1. Max-Planck-Institute for Informatics, Stuhlsatzenhausweg 85, 66123 Saarbrücken, Germany

Publication History

  1. Published Online: 5 FEB 2008
  2. Published Print: 11 JAN 2007

ISBN Information

Print ISBN: 9783527312788

Online ISBN: 9783527619368

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CHAPTER TOOLS

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Keywords:

  • anthrax;
  • transposon;
  • clustering;
  • miropeats;
  • transposable

Summary

This chapter contains sections titled:

  • Introduction

  • Algorithms and Tools for Mining Repeats

  • Tandem Repeats

  • Repeats and Genome Assembly Algorithms

  • Untangling the Mosaic Nature of Repeats (The A-Bruijn Graph)

  • Repeat Annotation in Genomes

  • References

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