Chapter 1. Comparative Genomics of Pseudomonas

  1. Prof. Dr. Bernd H. A. Rehm
  1. Kristoffer Kiil1,
  2. Tim T. Binnewies1,
  3. Hanni Willenbrock1,
  4. Susse Kirkelund Hansen2,
  5. Lei Yang2,
  6. Lars Jelsbak2,
  7. David W. Ussery1 and
  8. Carsten Friis1

Published Online: 31 MAR 2008

DOI: 10.1002/9783527622009.ch1

Pseudomonas: Model Organism, Pathogen, Cell Factory

Pseudomonas: Model Organism, Pathogen, Cell Factory

How to Cite

Kiil, K., Binnewies, T. T., Willenbrock, H., Hansen, S. K., Yang, L., Jelsbak, L., Ussery, D. W. and Friis, C. (2008) Comparative Genomics of Pseudomonas, in Pseudomonas: Model Organism, Pathogen, Cell Factory (ed B. H. A. Rehm), Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany. doi: 10.1002/9783527622009.ch1

Editor Information

  1. Institute of Molecular BioSciences, Massey University, Private Bag 11222, Palmerston North 4442, New Zealand

Author Information

  1. 1

    Technical University of Denmark, Center for Biological Sequence Analysis, BioCentrum-DTU, 2800 Lyngby, Denmark

  2. 2

    Technical University of Denmark, Infection Microbiology Group, BioCentrum-DTU, 2800 Lyngby, Denmark

Publication History

  1. Published Online: 31 MAR 2008
  2. Published Print: 26 MAR 2008

ISBN Information

Print ISBN: 9783527319145

Online ISBN: 9783527622009

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Keywords:

  • comparative genomics;
  • pseudomonas;
  • model organism;
  • pathogen;
  • cell factory;
  • pan/core genome;
  • phylogeny;
  • blast atlas;
  • functional categories;
  • codon usage;
  • codon expression

Summary

This chapter contains sections titled:

  • Introduction

    • Other Species of Pseudomonas

    • Obtaining Sequence Data on Pseudomonas

  • Pan/Core Genome of Pseudomonas

  • Phylogeny of Pseudomonas

  • Blast Atlas of Pseudomonas Genomes

    • Region 5 243 000–5 361 000

    • Region 713 000–785 000

  • Functional Categories

  • Codon Usage and Expression

  • Future Outlook

  • References