Chapter 17. Structural Phylogenomic Inference of Plant Gene Function

  1. Prof. Dr. Günter Kahl3,4,
  2. Prof. Dr. Khalid Meksem5
  1. Nandini Krishnamurthy1,
  2. Jim Leebens-Mack2,
  3. Kimmen Sjölander1

Published Online: 11 JUN 2008

DOI: 10.1002/9783527622542.ch17

Book Title

The Handbook of Plant Functional Genomics: Concepts and Protocols

The Handbook of Plant Functional Genomics: Concepts and Protocols

Additional Information

How to Cite

Krishnamurthy, N., Leebens-Mack, J. and Sjölander, K. (2008) Structural Phylogenomic Inference of Plant Gene Function, in The Handbook of Plant Functional Genomics: Concepts and Protocols (eds G. Kahl and K. Meksem), Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany. doi: 10.1002/9783527622542.ch17

Editor Information

  1. 3

    Mohrmühlgasse 3, 63500 Seligenstadt, Germany

  2. 4

    GenXPro GmbH, Frankfurt Innovation Center Biotechnology (FIZ), Altenhöferallee 3, 60438 Frankfurt am Main, Germany

  3. 5

    Department of Plant, Soil and Agricultural Systems, Southern Illinois University, Carbondale, IL 62901-4415, USA

Author Information

  1. 1

    University of California at Berkeley, Department of Bioengineering, 473 Evans Hall, Berkeley, CA 94720-1762, USA

  2. 2

    University of Georgia, Department of Plant Biology, Athens, GA 30602-7271, USA

Publication History

  1. Published Online: 11 JUN 2008
  2. Published Print: 10 JUN 2008

ISBN Information

Print ISBN: 9783527318858

Online ISBN: 9783527622542

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Keywords:

  • structural phylogenomics;
  • annotation transfer;
  • phylogenomic analysis;
  • gene duplication;
  • domain shuffling;
  • orthology

Summary

This chapter contains sections titled:

  • Introduction

  • Challenges in Protein Function Prediction

  • The Nomenclature of Homology

  • Structural Phylogenomic Inference of Function

  • Recommended Protocols for a Structural Phylogenomic Pipeline

  • Web Servers and Databases useful in Phylogenomic Inference

  • Discussion

  • References

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