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LITERATURE CITED

  • Adler CJ, Dobney K, Weyrich LS, Kaidonis J, Walker AW, Haak W, Bradshaw CJA, Townsend G, Soltysiak A, Alt KW, Parkhill J, Cooper A. 2013. Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions. Nat Genet 45:450455.
  • Anderson RM, May RM. 1979. Population biology of infection diseases: Part I. Nature 280:361367.
  • Anderson RM, May RM. 1992. Infection diseases of humans—dynamics and control. Oxford: Oxford University Press.
  • Ankel-Simons F. 2007. Primate anatomy an introduction, 3rd ed. San Diego: Academic Press.
  • Anukam KC, Osazuwa EO, Ahonkhai I, Reid G. 2006a. Lactobacillus vaginal microbiota of women attending a reproductive health care service in Benin city, Nigeria. Sex Transm Dis 33:5962.
  • Arneberg P. 2002. Host population density and body mass as determinants of species richness in parasite communities: comparative analyses of directly transmitted nematodes of mammamls. Ecography 25:8894.
  • Bäckhed F, Ley RE, Sonnenburg JL, Peterson DA, Gordon JI. 2005. Host-bacterial mutualism in the human intestine. Science 307:19151920.
  • Bäckhed F, Manchester JK, Semenkovich CF, Gordon JI. 2007. Mechanisms underlying the resistance to diet-induced obesity in germ-free mice. Proc Natl Acad Sci USA 104:979984.
  • Bakken, LR. 1985. Separation and purification of bacteria from soil. Appl Environ Microbiol 49:14821487.
  • Bercik P, Park AJ, Sinclari D, Khoshdeil A, Lu J, Huang X, Deng Y, Blennerhassett PA, Fahnestock M, Moine D, Berger B, Huizinga JD, Kunze W, McLean PG, Bergonzelli GE, Collins SM, Verdu EF. 2011. The anxiolytic effect of Bifidobacterium longum NCC3001 involves vagal pathway for gut-brain communication. J Neurogastroenterol Motil 23:11321139.
  • Björkholm B, Mei BC, Lundin A, Rafter J, Hibberd M, Pettersson S. 2009. Intestinal microbiota regulate xenobiotic metabolism in the liver. PLoS One 4:18.
  • Boskey ER, Cone RA, Whaley KJ, Moench TR. 2001. Origins of vaginal acidity: high D/L lactate ratio is consistent with bacteria being the primary source. Hum Reprod 16:18091813.
  • Boskey ER, Telsch KM, Whaley KJ, Moench TR, Cone RA. 1999. Acid production by vaginal flora in vitro is consistent with the rate and extent of vaginal acidification. Infect Immun 67:51705175.
  • Branton WG, Ellestad KK, Maingat F, Wheatley BM, Rud E, Warren RL, Holt RA, Surette MG, Power C. 2013. Brain microbial populations in HIV/AIDS: α-proteobacteria predominate independent of host immune status. PLoS One 8:e54673.
  • Brown CR, Brown MB. 1986. Ectoparasitism as a cost of coloniality in cliff swallows (Hirundo pyrrhonota). Ecology 67:12061218.
  • Brownlie JC, Johnson KN. 2009. Symbiont-mediated protection in insect hosts. Trends Microbiol 17:348354.
  • Burton JP, Reid G. 2002. Evaluation of the bacterial vaginal flora of 20 postmenopausal women by direct (Nugent score) and molecular (polymerase chain reaction and denaturing gradient gel electrophoresis) techniques. J Infect Dis 186:17701780.
  • Campbell C, Fuentes A, MacKinnon K, Bearder S, Stumpf RM. 2011. Primates in perspective, 2nd ed. New York: Oxford University Press.
  • Cauci S, Driussi S, De Santo D, Penacchioni P, Iannicelli T, Lanzafame P, De Seta F, Quadrifoglio F, de Aloysio D, Guaschino S. 2002. Prevalence of bacterial vaginosis and vaginal flora changes in peri-and postmenopausal women. J Clin Microbiol 40:21472152.
  • Chan RC, Bruce AW, Reid G. 1984. Adherence of cervical, vaginal and distal urethral normal microbial flora to human uroepithelial cells and the inhibition of adherence of gram-negative uropathogens by competitive exclusion. J Urol 131:596601.
  • Chapman CA, Balcomb SR, Gillespie T, Skorupa J, Struhsaker TT. 2000. Long-term effects of logging on African primate communities: a 28 year comparison from Kibale National Park, Uganda. Conserv Biol 14:207217.
  • Cherpes TL, Meyn LA, Krohn MA, Lurie JG, Hillier SL. 2003. Association between acquisition of herpes simplex virus type 2 in women and bacterial vaginosis. Clin Infect Dis 37:319325.
  • Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R. 2009. Bacterial community variation in human body habitats across space and time. Science 326:16941697.
  • Danielsson D, Teigen PK, Moi H. 2011. The genital econiche: focus on microbiota and bacterial vaginosis. Ann N Y Acad Sci 1230:4848.
  • Darwin C. 1871. The descent of man, and selection in relation to sex. London: Murray.
  • Davies TJ, Pedersen AB. 2008. Phylogeny and geography predict pathogen community similarity in wild primates and humans. Proc R Soc Lond B Biol Sci 275:16951701.
  • De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet JB, Massart S, Collini S, Pieraccini G, Lionetti P. 2010. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci USA 107:1469114696.
  • Degnan PH, Pusey AE, Lonsdorf EV, Goodall J, Wroblewski EE, Wilson ML, Rudicell RS, Hahn BH, Ochman H. 2012. Factors associated with the diversification of the gut microbial communities within chimpanzees from Gombe National Park. Proc Natl Acad Sci USA 109:1303413039.
  • Desbonnet L, Garrett L, Clarke G, Bienenstock J, Dinan TG. 2008. The probiotic bifidobacteria infantist: an assessment of potential antidepressant properties in the rat. J Psychiatr Res 43:164174.
  • Dethlefsen L, Eckburg PB, Bik EM, Relman DA. 2006. Assembly of the human intestinal microbiota. Trends Ecol Evol 21:517523.
  • DiGiulio DB, Romero R, Amogan HP, Kusanovic JP, Bik EM, Gotsch F, Kim CJ, Erez O, Edwin S, Relman A. 2008. Microbial prevalence, diversity and abundance in amniotic fluid during preterm labor: a molecular and culture-based investigation. PLoS One 3:e3056.
  • Dixson A. 2012. Primate sexuality: comparative studies of the prosimians, monkeys, apes, and human beings. Oxford: Oxford University Press.
  • Dobber R, Hertogh-Huijbregts A, Rozing J, Bottomly K, Nagelkerken L. 1992. The involvement of the intestinal microfloral in the expansion of CD4+ T cells with a naïve phenotype in the periphery. Dev Immunol 2:141150.
  • Dominguez-Bello MG, Costello EK, Contreras M, Magris M, Hidalgo G, Fierer N, Knight R. 2010. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci USA 107:1197111975.
  • Donders GG. 2007. Definition and classification of abnormal vaginal flora. Best Pract Res Clin Obstet Gynaecol 21:355373.
  • Donders GG, Bosmans E, Dekeersmaeckerb A, Vereecken A, Van Bulck B, Spitz B. 2000. Pathogenesis of abnormal vaginal bacterial flora. Am J Obstet Gynecol 182:872878.
  • Eren AM, Zozaya M, Taylor CM, Dowd SE, Martin DH, Ferris MJ. 2011. Exploring the diversity of Gardnerella vaginalis in the genitourinary tract of monogamous couples through subtle nucleotide variation. PLoS One 6:e26732.
  • Faith JJ, Guruge JL, Charbonneau M, Subramanian S, Seedorf H, Goodman AL, Clemente JC, Knight R, Heath AC, Leibel RL, Rosenbaum M, Gordon JI. 2013.The long-term stability of the human gut microbiota. Science 341:1237439.
  • Faust K, Sathirapongsasuti J, Izard J, Segata N, Gevers D, Raes J, Huttenhower C. 2012. Microbial co-occurrence relationships in the human microbiome. PLoS Comput Biol 8:117.
  • Fethers KA, Fairley CK, Hocking JS, Gurrin LC, Bradshaw CS. 2008. Sexual risk factors and bacterial vaginosis: a systematic review and meta-analysis. Clin Infect Dis 47:14261435.
  • Fethers KA, Fairley CK, Morton A, Hocking JS, Hopkins C, Kennedy LJ, Fehler G, Bradshaw CS. 2009. Early sexual experiences and risk factors for bacterial vaginosis. J Infect Dis 200:16621670.
  • Fienberg R, Cohen RB. 1968. Enzymes of glycogen metabolism in the squamous epithelium of the cervix: a histochemical study. Obstet Gynecol 31:608616.
  • Fierer N, Bradford MA, Jackson RB. 2007. Toward an ecological classification of soil bacteria. Ecology 88:13541364.
  • Fierer N, Jackson RB. 2006. The diversity and biogeography of soil bacterial communities. Proc Natl Acad Sci USA 103:626631.
  • Fleagle JG. 2013. Primate adaptation and evolution, 3rd ed. New York: Academic Press.
  • Forsyth P, Kunze WA. 2013. Voices from within: gut microbes and the CNS. Cell Mol Life Sci 70:5569.
  • Fredricks DN, Fiedler TL, Marrazzo JM. 2005. Molecular identification of bacteria associated with bacterial vaginosis. N Engl J Med 353:18991911.
  • Freeland WJ. 1976. Pathogens and the evolution of primate sociality. Biotropica 8:1224.
  • Gaboriau-Routhiau V, Rakotobe S, Lécuyer E, Mulder I, Lan A, Bridonneau C, Rochet V, Pisi A, De Paepe M, Brandi G, Eberl G, Snel J, Kelly D, Cerf-Bensussan N. 2009. The key role of segmented filamentous bacteria in the coordinated maturation of gut helper T cell responses. Immunity 31:677689.
  • Gajer P, Brotman RM, Bai G, Sakamoto J, Schutte UM, Zhong X, Koenig SS, Fu L, Ma Z, Zhou X, Abdo Z, Forney LJ, Ravel J. 2012. Temporal dynamics of the human vaginal microbiota. Sci Transl Med 4:151158.
  • Galhardo CL, Soares JM, Simoes RS, Haidar MA, Rodrigues DLG, Baracat EC. 2006. Estrogen effects on the vaginal pH, flora and cytology in late postmenopause after a long period without hormone therapy. Clin Exp Obstet Gynecol 33:8589.
  • Gantert M, Been JV, Gavilanes AW, Garnier Y, Zimmerman LJ, Kramer BW. 2010. Chorioamnionitis: a multiorgan disease of the fetus? J Perinatol 30:S21S30.
  • Gill SR, Mihai P, DeBoy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Fredricks DN, Fiedler TL, Marrazzo JM. 2005. Molecular dentification of bacteria associated with bacterial vaginosis. N Engl J Med 353:18991911.
  • Goldberg TL, Gillespie TR, Rwego IB, Estoff EE, Chapman CA. 2008. Forest fragmentation as cause of bacterial transmission among primates, humans, and livestock, Uganda. Emerging Infectious Diseases 14:13751382.
  • Gregoire AT, Kandil O, Ledger WJ. 1971. The glycogen content of human vaginal epithelial tissue. Fertil Steril 22:6468.
  • Gupta K, Stapleton AE, Hooton TM, Roberts PL, Fennell CL, Stamm WE. 1998. Inverse association of H2O2-producing lactobacilli and vaginal Escherichia coli colonization in women with recurrent urinary tract infections. J Infect Dis 178:446450.
  • Gupta S, Maiden MC. 2001. Exploring the evolution of diversity in pathogen populations. Trends Microbiol 9:181185.
  • Hammerschlag MR, Alpert S, Rosner I, Thurston P, Semine D, McComb D, McCormack WM. 1978. Microbiology of the vagina in children: normal and potentially pathogenic organisms. Pediatrics 62:5762.
  • Harcourt AH, Harvey PH, Larson SG, Short RV. 1981. Testis weight, body weight and breeding system in primates. Nature 293:5557.
  • Harvey PH, Read AF, John JL, Gregory RD, Keymer AE. 1991. An evolutionary perspective: using the comparative method. In: Toft CA, Aeschlimann A, Bolis L, editors. Parasite-host associations. Oxford: Oxford University Press. p 344355.
  • Heath PT, Schuchat A. 2007. Perinatal group B streptococcal disease. Best Pract Res Clin Obstet Gynaecol 21:411424.
  • Heijtz RD, Wang S, Anuar F, Qian Y, Björkholm B, Samuelsson A, Hibberd ML, Forssberg H, Pettersson S. 2011. Normal gut microbiota modulates brain development and behavior. Proc Natl Acad Sci USA 108:30473052.
  • Heinemann C, Reid G. 2005. Vaginal microbial diversity among postmenopausal women with and without hormone replacement therapy. Can J Microbiol 51:777781.
  • Hill GB. 1993. The microbiology of bacterial vaginosis. Am J Obstet Gynecol 169:450454.
  • Hillier SL, Nugent RP, Eschenbach DA, Krohn MA, Gibbs RS, Martin DH, Cotch MF, Edelman R, Pastorek JG, Rao V, McNellis D, Regan JA, Carey C, Klebanoff MA. 1995. Association between bacterial vaginosis and preterm delivery of a low-birth-weight infant. N Engl J Med 333:17371742.
  • Hughes JB, Hellmann JJ, Ricketts TH, Bohannan BJ. 2001. Counting the uncountable: statistical approaches to estimating microbial diversity. Appl Environ Microbiol 67:43994406.
  • Hummelen R, Macklaim JM, Bisanz JE, Hammond JA, McMillan A, Vongsa R, Koenig D, Gloor GB, Reid G. 2011. Vaginal microbiome and epithelial gene array in post-menopausal women with moderate to severe dryness. PLoS One 6:e26602.
  • Hyman RW, Fukushima M, Diamond L, Kumm J, Giudice LC, Davis RW. 2005. Microbes on the human vaginal epithelium. Proc Natl Acad Sci USA 102:79527957.
  • Ichinohe T, Pang IK, Kumamoto Y, Peaper DR, Ho JH, Murray TS, Iwasaki A. 2011. Microbiota regulates immune defense against respiratory tract influenza A virus infection. Proc Natl Acad Sci USA 108:53545359.
  • Immerman RS. 1986. Sexually transmitted disease and human evolution: survival of the ugliest? Hum Ethol Newslett 4:67.
  • Jarvis WR. 1996. The epidemiology of colonization. Infect Control Hosp Epidemiol 17:4752.
  • Jaspers E, Overmann J. 2004. Ecological significance of microdiversity: identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies. Appl Environ Microbiol 70:48314839.
  • Johansson M, Lycke NY. 2003. Immunology of the human genital tract. Curr Opin Infect Dis 16:4349.
  • Johnson AP, Ison CA, Hetherington CM, Osborn MF, Southerton G, London WT, Easmon CS, Taylor-Robinson D. 1984. A study of the susceptibility of three species of primate to vaginal colonization with Gardnerella vaginalis. Br J Exp Pathol 65:389396.
  • Jovita MR, Collins MD, Sjödén B, Falsen E. 1999. Characterization of a novel Atopobium isolate from the human vagina: description of Atopobium vaginae sp. nov. Int J Syst Evol Microbiol 49:15731576.
  • Kaewsrichan J, Peeyananjarassri K, Kongprasertkit J. 2006. Selection and identification of anaerobic lactobacilli producing inhibitory compounds against vaginal pathogens. FEMS Immunol Med Microbiol 48:7583.
  • Kalyoussef S, Nieves E, Dinerman E, Carpenter C, Shankar V, Oh J, Burd B, Angeletti RH, Buckheit KW, Fredricks DN, Madan RP, Keller MJ, Herold BC. 2012. Lactobacillus proteins are associated with the bactericidal activity against E. coli of female genital tract secretions. PLoS One 7, e49506.
  • Kappeler P, van Schaik CP. 1999. Sexual selection in primates: new and comparative perspectives. Cambridge: Cambridge University Press
  • Kau AL, Ahern PP, Griffin NW, Goodman AL, Gordon JI. 2011. Human nutrition, the gut microbiome and the immune system. Nature 474:327336.
  • Keane FEA, Ison CA, Taylor-Robinson D. 1997. A longitudinal study of the vaginal flora over a menstrual cycle. Int J STD AIDS 8:489494.
  • Khan-Dawood FS. 1998. Symposium: reproduction in baboons. Hum Reprod Update 4:369370.
  • Kim TK, Thomas SM, Ho M, Sharma S, Reich CI, Frank JA, Yeater KM, Biggs DR, Nakamura N, Stumpf R, Leigh SR, Tapping RI, Blanke SR, Slauch JM, Gaskins HR, Weisbaum JS, Olsen GJ, Hoyer LL, Wilson BA. 2009. Heterogeneity of vaginal microbial communities within individuals. J Clin Microbiol 47:11811189.
  • Kinde I, Bettegowda C, Wang Y, Wu J, Agrawal N, Shih IeM, Kurman R, Dao F, Levine DA, Giuntoli R, Roden R, Eshleman JR, Carvalho JP, Marie SK, Papadopoulos N, Kinzler KW, Vogelstein B, Diaz LA Jr. 2013. Evaluation of DNA from the Papanicolaou test to detect ovarian and endometrial cancers. Sci Transl Med 5:167ra4.
  • King N. 2004. The unicellular ancestry of animal development. Dev Cell 7:313325.
  • Klebanoff SJ, Hillier SL, Eschenbach DA, Waltersdorph AM. 1991. Control of the microbial flora of the vagina by H202-generating lactobacilli. J Infect Dis 164:94100.
  • Kokko H, Ranta E, Ruxton G, Lundberg P. 2002. Sexually transmitted disease and the evolution of mating systems. Evolution 56:10911100.
  • Koumans EH, Kendrick JS. 2001. Preventing adverse sequelae of bacterial vaginosis: a public health program and research agenda. Sex Transm Dis 28:292297.
  • Lamont RF, Sawant SR. 2005. Infection in the prediction and antibiotics in the prevention of spontaneous preterm labour and preterm birth. Minerva Ginecol 57:423433.
  • Langenheder S, Lindström ES, Tranvik LJ. 2005. Weak coupling between community composition and functioning of aquatic bacteria. Limnol Oceanogr 50:957967.
  • Leitich H. 2005. Secondary predictors of preterm labour. Br J Obstet Gynaecol 112:4850.
  • Leitich H, Kiss H. 2007. Asymptomatic bacterial vaginosis and intermediate flora as risk factors for adverse pregnancy outcome. Best Pract Res Clin Obstet Gynaecol 21:375390.
  • Lewis CM Jr, Obregón-Tito A, Tito RY, Foster MW, Spicer PG. 2012. The Human Microbiome Project: lessons from human genomics. Trends Microbiol 20:14.
  • Ley RE, Lozupone CA, Hamady M, Knight R, Gordon JI. 2008. Worlds within worlds: evolution of the vertebrate gut microbiota. Nat Rev Microbiol 6:776788.
  • Linhares IM, Summers PR, Larsen B, Giraldo PC, Witkin SS. 2011. Contemporary perspectives on vaginal pH and lactobacilli. Am J Obstet Gynaecol 204:120121.
  • Lockhart AB, Thrall PH, Antonovics J. 1996. Sexually transmitted diseases in animals: ecological and evolutionary implications. Biol Rev 71:415471.
  • Loehle C. 1995. Social barriers to pathogen transmission in wild animal populations. Ecology 76:326335.
  • Ma B, Forney LJ, Ravel J. 2012. Vaginal microbiome: rethinking health and disease. Annu Rev Microbiol 66:371389.
  • MacManes MD. 2011. Promiscuity in mice is associated with increased vaginal bacterial diversity. Naturwissenschaften 98:951960.
  • Maes M, Kubera M, Leunis JC. 2008. The gut-brain barrier in major depression: intestinal mucosal dysfunction with an increased translocation of LPS from gram negative enterobacteria (leaky gut) plays a role in the inflammatory pathophysiology of depression. Neuroendocrinol Lett 29:117124.
  • Mardis ER. 2008. Next-generation DNA sequencing methods. Annu. Rev. Genomics Hum. Genet., 9:387402.
  • Marguerat S, Wilhelm BT, Bähler J. 2008. Next-generation sequencing: applications beyond genomes. Biochem Soc Trans 36:10911096.
  • Marrazzo JM, Antonio M, Agnew K, Hillier SL. 2009. Distribution of genital Lactobacillus strains shared by female sex partners. J Infect Dis 199:680683.
  • Marrazzo JM, Thomas KK, Fiedler TL, Ringwood K, Fredricks DN. 2010. Risks for acquisition of bacterial vaginosis among women who report sex with women: a cohort study. PLoS One 5:e11139.
  • Martin HL, Richardson BA, Nyange PM, Lavreys L, Hillier SL, Chohan B, Mandaliya K, Ndinya-Achola JO, Bwayo J, Kreiss J. 1999. Vaginal lactobacilli, microbial flora, and risk of human immunodeficiency virus type 1 and sexually transmitted disease acquisition. J Infect Dis 180:18631868.
  • Martin R, Heilig GHJ, Zoetendal EG, Smidt H, Rodríguez JM. 2007. Diversity of the Lactobacillus group in breast milk and vagina of healthy women and potential role in the colonization of the infant gut. J Appl Microbiol 103:26382644.
  • May RM, Anderson RM. 1979. Population biology of infectious diseases: Part II. Nature 280:455461.
  • Mazmanian SK, Liu CH, Tzianabos AO, Kasper DL. 2005. An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system. Cell 122:107118.
  • Mazmanian SK, Round JL, Kasper DL. 2008. A microbial symbiosis factor prevents intestinal inflammatory disease. Nature 453:620625.
  • McDermott J, Steketee R, Larsen S, Wirima J. 1993. Syphilis-associated perinatal and infant mortality in rural Malawi. Bull World Health Organ 71:773780.
  • McFall-Ngai M. 2007. Adaptive immunity: care for the community. Nature 445:153153.
  • McGregor JA, French JI. 2000. Bacterial vaginosis in pregnancy. Obstet Gynecol Surv 55:119.
  • Miller M, Tang YW. 2009. Basic concepts of microarrays and potential applications in clinical microbiology. Clin Microbiol Rev 22:611633.
  • Miller WJ, Ehrman L, Schneider D. 2010. Infectious speciation revisited: impact of symbiont-depletion on female fitness and mating behavior of Drosophila paulistorum. PLoS Pathog 6:117.
  • Mirmonsef P, Gilbert D, Veazey RS, Wang J, Kendrick SR, Spear GT. 2012. A comparison of lower genital tract glycogen and lactic acid levels in women and macaques: implications for HIV and SIV susceptibility. AIDS Res Hum Retroviruses 28:7681.
  • Mitreva M. 2012. Structure, function and diversity of the healthy human microbiome. Nature 486:207214.
  • Moeller AH, Degnan PH, Pusey AE, Wilson ML, Hahn BH, Ochman H. 2012. Chimpanzees and humans harbour compositionally similar gut enterotypes. Nat Commun 3:1179.
  • Moller AP, Dufva R, Allander K. 1993. Parasites and the evolution of host social behavior. Adv Study Behav 22:65102.
  • Moran NA, McCutcheon JP, Nakabachi A. 2008. Genomics and evolution of heritable bacterial symbionts. Annu Rev Genet 42:165190.
  • Narushima S, Itoh K, Sankai T, Takasaka M, Otani I, Yoshikawa Y. 1997. Changes in normal vaginal flora of African green monkeys (Cercopithecus aethiops) during the menstrual cycle. Exp Anim 46:4752.
  • Nunn CL, Altizer S. 2006. Infectious diseases in primates: behavior, ecology and evolution. Oxford: Oxford University Press.
  • Nunn CL, Altizer S, Jones KE, Sechrest W. 2003. Comparative tests of parasite species richness in primates. Am Nat 162:597614.
  • Nunn CL, Altizer S, Sechrest W, Jones KE, Barton RA, Gittleman JL. 2004. Parasites and the evolutionary diversification of primate clades. Am Nat 164:S90S103.
  • Nunn CL, Gittleman JL, Antonovics J. 2000. Promiscuity and the primate immune system. Science 290:11681170.
  • Nunn CL, Thrall PH, Leendertz FH, Boesch C. 2011. The spread of fecally transmitted parasites in socially-structured populations. PLoS One 6:110.
  • Nyholm SV, McFall-Ngai M. 2004. The winnowing: establishing the squid–vibrio symbiosis. Nat Rev Microbiol 2:632642.
  • Oakley BB, Fiedler TL, Marrazzo JM, Fredricks DN. 2008. Diversity of human vaginal bacterial communities and associations with clinically defined bacterial vaginosis. Appl Environ Microbiol 74:48984909.
  • Ochman H, Worobey M, Kuo C-H, Ndjango J-BN, Peeters M. 2010. Evolutionary relationships of wild hominids recapitulated by gut microbial communities. PLoS Biol 8:e1000546
  • Onderdonk AB, Zamarchi GR, Walsh JA, Mellor RD, Munoz A, Kass EH. 1986. Methods for quantitative and qualitative evaluation of vaginal microflora during menstruation. Appl Environ Microbiol 51:333339.
  • Paavonen J. 1982. Physiology and ecology of the vagina. Scand J Infect Dis Suppl 40:3135.
  • Pabich WL, Fihn SD, Stamm WE, Scholes D, Boyko EJ, Gupta K. 2003. Prevalence and determinants of vaginal flora alterations in postmenopausal women. J Infect Dis 188:10541058.
  • Pavlova SI, Kilic AO, Kilic SS, So JS, Nader-Macias ME, Simoes JA, Tao L. 2002. Genetic diversity of vaginal lactobacilli from women in different countries based on 16S rRNA gene sequences. J Appl Microbiol 92:451459.
  • Pedersen AB, Jones KE, Nunn CL, Altizer S. 2007. Infectious diseases and extinction risk in wild mammals. Conserv Biol 21:12691279.
  • Pettersson K. 2007. Perinatal infection with Group B streptococci. Semin Fetal Neonatal Med 12:193197.
  • Pinheiro SP, Holmes MD, Pollak MN, Barbieri RL, Hankinson SE. 2005. Differences in premenopausal endogenous hormones. Cancer Epidemiol Biomarkers Prev 14:21472153.
  • Profet M. 1993. Menstruation as a defense against pathogens transported by sperm. Q Rev Biol 68 335386.
  • Pybus V, Onderdonk AB. 1999. Microbial interactions in the vaginal ecosystem, with emphasis on the pathogenesis of bacterial vaginosis. Microbes Infect 1:285292.
  • Ravel J, Gajer P, Abdo Z, Schneider GM, Koenig SS, McCulle SL, Karlebach S, Gorle R, Russell J, Tacket CO, Brotman RM, Davis CC, Ault K, Peralta L, Forney LJ. 2011. Vaginal microbiome of reproductive-age women. Proc Natl Acad Sci USA 108:46804687.
  • Rivera AJ, Frank JA, Stumpf R, Salyers AA, Wilson B, Olsen GJ, Leigh S. 2010b. Differences between the normal vaginal bacterial community of baboons and that of humans. Am J Primatol 71:18.
  • Rivera AJ, Stumpf RM, Wilson B, Leigh S, Salyers AA. 2010a. Baboon vaginal microbiota: an overlooked aspect of primate physiology. Am J Primatol 72:467474.
  • Roberts MG, Dobson AP, Arneberg P, de Leo GA, Krecek RC. 2002. Parasite community ecology and biodiversity. In: Hudson PJ, Rizzoli AP, Grenfell BT, Heesterbeek JAP, Dobson AP, editors. The ecology of wildlilfe diseases. Oxford: Oxford University Press.
  • Rokas A. 2008. The molecular origins of multicellular transitions. Curr Opin Genet Dev 18:472478.
  • Rosenberg K, Trevathan W. 2002. Birth, obstetrics and human evolution. Br J Obstet Gynaecol 109:11991206.
  • Rosenberg PS. 1995. Scope of the AIDS epidemic in the united states. Science 270:13721375.
  • Rushmore J. 2013. Social and Ecological Drivers of Pathogen Transmission Dynamics in East African Great Apes. PhD Dissertation. University of Georgia Athens.
  • Rushmore J. Caillaud D, Matamba L, Stumpf RM, Borgatti SP, Altizer S. 2013. Social network analysis of wild chimpanzees provides insights for predicting infectious disease risk. J Anim Ecol 82:976986.
  • Schulz KF, Cates W, O'Mara PR. 1987. Pregnancy loss, infant death, and suffering: legacy of syphilis and gonorrhoea in Africa. Genitourin Med 63:320325.
  • Schwebke JR. 2005. Abnormal vaginal flora as a biological risk factor for acquisition of HIV infection and sexually transmitted diseases. J Infect Dis 192:13151317.
  • Schwebke JR. 2009. New concepts in the etiology of bacterial vaginosis. Curr Infect Dis Rep 11:143147.
  • Schwebke JR, Desmond R. 2005. Risk factors for bacterial vaginosis in women at high risk for sexually transmitted diseases. Sex Transm Dis 32:654658.
  • Schwebke JR, Weiss H. 2001. Influence of the normal menstrual cycle on vaginal microflora. Clin Infect Dis 32:325325.
  • Sewankambo N, Gray RH, Wawer MJ, Paxton L, McNairn D, Wabwire-Mangen F, Serwadda D, Li C, Kiwanuka N, Hillier SL, Rabe L, Gaydos CA, Quinn TC, Konde-Lule J. 1997. HIV-1 infection associated with abnormal vaginal flora morphology and bacterial vaginosis. Lancet 350:546550.
  • Sharon G, Segal D, Ringo JM, Hefetz A, Zilber-Rosenberg I, Rosenberg E. 2010. Commensal bacteria play a role in mating preference of Drosophila melanogaster. Proc Natl Acad Sci USA 107:2005120056.
  • Short RV. 1979. Sexual selection and its component parts, somatic and genital selection, as illustrated by man and the great apes. Adv Study Behav 9:131158.
  • Singh B, Cutler JC, Utidjian HMD. 1972. Studies on development of a vaginal preparation providing both prophylaxis against venereal disease, other genital infections and contraception. III. In vitro effect of vaginal contraceptive and selected vaginal preparations of Candida albicans and Trichomonas vaginalis. Contraception 5:401411.
  • Sobel JD. 1999. Is there a protective role for vaginal flora? Curr Infect Dis Rep 1:379383.
  • Sobel JD, Nagappan V, Nyirjesy P. 1999. Metronidazole-resistant vaginal trichomoniasis—an emerging problem. N Engl J Med. 341:292293.
  • Soules MR, Sherman S, Parrott E, Rebar R, Santoro N, Utian W, Woods N. 2001. Executive summary: stages of reproductive aging workshop (STRAW). Climacteric 4:267272.
  • Spear GT, Gilbert D, Sikaroodi M, Doyle L, Green L, Gillevet PM, Landay AL, Veazey RS. 2010. Identification of rhesus macaque genital microbiota by 16S pyrosequencing shows similarities to human bacterial vaginosis: implications for use as an animal model for HIV vaginal infection. AIDS Res Hum Retroviruses 26:193200.
  • Srinivasan S, Liu C, Mitchell CM, Fiedler TL, Thomas KK, Agnew KJ, Marrazzo JM, Fredricks DN. 2010. Temporal variability of human vaginal bacteria and relationship with bacterial vaginosis. PLoS One 5:e10197.
  • Steer P. 2005. The epidemiology of preterm labor–a global perspective. J Perinatal Med 33:273276.
  • Stirling D, Evans DR, Pichert G, Shenton A, Kirk EN, Rimmer S, Steel CM, Lawson S, Busby-Earle RMC, Walker J, Lalloo FI, Eccles DM, Porteous ME. 2005. Screening for familial ovarian cancer: failure of current protocols to detect ovarian cancer at an early stage according to the international federation of gynecology and obstetrics system. J Clin Oncol 23:55885596.
  • Stoyancheva GD, Danova ST, Boudakov IY. 2006. Molecular identification of vaginal lactobacilli isolated from Bulgarian women. Antonie Van Leeuwenhoek 90:201210.
  • Strassmann BI. 1996. The evolution of endometrial cycles and menstruation. Q Rev Biol 71 181220.
  • Street DA, Taylor-Robinson D, Hetherington CM. 1983. Infection of female squirrel monkeys (Saimiri sciureus) with trichomonas vaginalis as a model of trichomoniasis in women. Br J Vener Dis 59:249254.
  • Stumpf RM, Martinez-Mota R, Milich KM, Righini N, Shattuck MR. 2011. Sexual conflict in primates. Evol Anthropol 20:6275.
  • Stumpf RM, Yildirim S, Leigh S, Salyers A, White BA, Irwin M, Goldberg T, Alberts S, Altmann J, Wilson BA. 2010. Comparative primate vaginal microbial ecology. Am J Phys Anthropol 50 (Suppl):226.
  • Taha TE, Hoover DR, Dallabetta GA, Kumwenda NI, Mtimavalye LA, Yang LP, Liomba GN, Broadhead RL, Chiphangwi JD, Miotti, PG. 1998. Bacterial vaginosis and disturbances of vaginal flora: association with increased acquisition of HIV. AIDS 12:16991706.
  • Tasse L, Bercovici J, Pizzut-Serin S, Robe P, Tap P, Klopp C, Cantarel BL, Coutinho PM, Henrissat B, Leclerc M, Doré J, Monsan P, Remaud-Simeon M, Potocki-Veronese G. 2010. Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes. Genome Res 20:16051612.
  • Thies FL, König W, König B. 2007. Rapid characterization of the normal and disturbed vaginal microbiota by application of 16S rRNA gene terminal RFLP fingerprinting. J Med Microbiol 56:755761.
  • Thoma ME, Gray RH, Kiwanuka N, Aluma S, Wang MC, Sewankambo N, Wawer MJ. 2011. Longitudinal changes in vaginal microbiota composition assessed by Gram stain among never sexually active pre-and postmenarcheal adolescents in Rakai, Uganda. J Pediatr Adolesc Gynecol 24:4247.
  • Thrall PH, Antonovics J, Bever JD. 1997. Sexual transmission of disease and host mating systems: within-season reproductive success. Am Nat 149:485506.
  • Thrall PH, Antonovics J, Dobson AP. 2000. Sexually transmitted diseases in polygynous mating systems: prevalence and impact on reproductive success. Proc R Soc Lond B Biol Sci 267:15551563.
  • Tito RY, Knights D, Metcalf J, Obregon-Tito AJ, Cleeland L, Najar F, Roe B, Sobolik K, Belknap S, Foster M, Spicer P, Knight R, Lewis CM Jr. 2012. Insights from characterizing extinct human gut microbiomes. PLoS One 7:e51146.
  • Tito RY, Macmil S, Wiley G, Najar F, Cleeland L, Qu C, Wang P, Romagne F, Leonard S, Ruiz AJ, Reinhard K, Roe BA, Lewis CM Jr. 2008. Phylotyping and functional analysis of two ancient human microbiomes. PLoS One 3:e3703.
  • Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC, Bork P, Hugenholtz P, Rubin EM. 2005. Comparative metagenomics of microbial communities. Science 308:554557.
  • Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. 2007. The human microbiome project. Nature 449:804810.
  • Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI. 2006. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444:10271131.
  • Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Smith HO. 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:6674.
  • Verani JR, Schrag SJ. 2010. Group B streptococcal disease in infants: progress in prevention and continued challenges. Clin Perinatol 37:375392.
  • Verhelst R, Verstraelen H, Claeys G, Verschraegen G, Delanghe J, Van Simaey L, De Ganck C, Temmerman M, Vaneechoutte M. 2004. Cloning of 16S rRNA genes amplified from normal and disturbed vaginal microflora suggests a strong association between Atopobium vaginae, Gardnerella vaginalis and bacterial vaginosis. BMC Microbiol 4:16.
  • Verstraelen H, Senok AC. 2005. Vaginal lactobacilli, probiotics, and IVF. Reprod Biomed Online 11:674675.
  • Verstraelen H, Verhelst R, Claeys G, Temmerman M, Vaneechoutte M. 2004. Culture-independent analysis of vaginal microflora: the unrecognized association of Atopobium vaginae with bacterial vaginosis. Am J Obstet Gynecol 191:11301132.
  • Voravuthikunchai SP, Bilasoi S, Supamala O. 2006. Antagonistic activity against pathogenic bacteria by human vaginal lactobacilli. Anaerobe 12:221226.
  • Watts DH, Fazarri M, Minkoff H, Hillier SL, Sha B, Glesby M, Levine AM, Burk R, Palefsky JM, Moxley M, Ahdieh-Grant L, Strickler HD. 2005. Effects of bacterial vaginosis and other genital infections on the natural history of human papillomavirus infection in HIV-1–infected and high-risk HIV-1–uninfected women. J Infect Dis 191:11291139.
  • Weinstein L, Bogin M, Howard JH, Finkelstone BB. 1936. A survey of the vaginal flora at various ages with special reference to the Doederline bacillus. Am J Obstet Gynecol 32:211218.
  • Whitcher JP, Srinivasan M, Upadhyay MP. 2001. Corneal blindness: a global perspective. Bull World Health Organ 79:214221.
  • White BA, Creedon DJ, Nelson KE, Wilson BA. 2011. The vaginal microbiome in health and disease. Trends Endocrinol Metabol 22:389393.
  • White BA, Gomez AM, Ho M, Miller MB, Thomas S, Yeoman CJ, Yildirim S, Creedon DJ, Goldberg T, Leigh SR, Nelson KE, Stumpf RM, Wilson BA. 2011. Comparative analysis of the vaginal microbiome in health and disease. Genome Biol 11:S14
  • Witkin SS, Linhares IM, Giraldo P. 2007. Bacterial flora of the female genital tract: function and immune regulation. Best Pract Res Clin Obstet Gynaecol 21:347354.
  • Wlasiuk G, Nachman MW. 2010. Promiscuity and the rate of molecular evolution at primate immunity genes. Evolution 64:22042220.
  • Woese CR. 2002. On the evolution of cells. Proc Natl Acad Sci USA 99:87428747.
  • Wolf YI, Rogozin IB, Kondrashov AS, Koonin EV. 2001. Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. Genome Res 11:356372.
  • Woolhouse ME, Taylor LH, Haydon DT. 2001. Population biology of multihost pathogens. Science 292:11091112.
  • Wren BW. 2000. Microbial genome analysis: insights into virulence, host adaptation and evolution. Nat Rev Genet 1:3039.
  • Wylie JG, Henderson A. 1969. Identity and glycogen-fermenting ability of lactobacilli isolated from the vagina of pregnant women. J Med Microbiol 2:363366.
  • Xu J, Gordon JI. 2003. Honor thy symbionts. Proc Natl Acad Sci USA 100:1045210459.
  • Yang X, Xie L, Li Y, Wei C. 2009. More than 9,000,000 unique genes in human gut bacterial community: estimating gene numbers inside a human body. PLoS One 4:e6074.
  • Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Baldassano RN, Anokhin AP, Heath AC, Warner B, Reeder J, Kuczynski J, Caporaso JG, Lozupone CA, Lauber C, Clemente JC, Knights D, Knight R, Gordon JI. 2012. Human gut microbiome viewed across age and geography. Nature 486:222227.
  • Yeoman CJ, Thomas SM, Miller MEB, Ulanov AV, Torralba M, Lucas S, Gillis M, Cregger M, Gomez A, Ho M, Leigh SR, Stumpf RM, Creedon DJ, Smith MA, Weisbaum JS, Nelson KE, Wilson BA, White BA. 2013. A multi-omic systems-based approach reveals metabolic markers of bacterial vaginosis and insight into the disease. PLoS One 8:118.
  • Yeoman CJ, Yildirim S, Thomas SM, Durkin AS, Torralba M, Sutton G, Buhay CJ, Ding Y, Dugan-Rocha SP, Muzny DM, Qin X, Gibbs RA, Leigh SR, Stumpf R, White BA, Highlander SK, Nelson KE, Wilson BA. 2010. Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential. PLoS One 5:e12411.
  • Yeoman CJ, Stumpf RM, White BA, Wilson BA, Nelson KE, Torralba M, Gillis M, Mugisha L, Leigh SR. 2012. Metagenomic comparisons of gastrointestinal microbial function in hominoids. American Journal of Physical Anthropology 147(s54):308.
  • Yildirim S, Rivera A, Leigh S, Yeoman C, White B, Goldberg T, Wilson B, Stumpf RM. 2011. Vaginal microbial community structure and maternal ecology in primates. Am J Phys Anthropol 52 (Suppl):315316.
  • Yildirim S, Yeoman CJ, Sipos M, Torralba M, Wilson BA, Goldberg TL, Stumpf RM, Leigh SR, White BA, Nelson KE. 2010. Characterization of the fecal microbiome from non-human wild primates reveals species specific microbial communities. PLoS One 5:111.
  • Zhou X, Bent SJ, Schneider MG, Davis CC, Islam MR, Forney LJ. 2004. Characterization of vaginal microbial communities in adult healthy women using cultivation-independent methods. Microbiology 150:25652573.
  • Zhou X, Brotman RM, Gajer P, Abdo Z, Schüette U, Ma S, Ravel J, Forney LJ. 2010a. Recent advances in understanding the microbiology of the female reproductive tract and the causes of premature birth. Infect Dis Obstet Gynecol 2010:737425.
  • Zhou Y, Gao H, Mihindukulasuriya KA, La Rosa PS, Wylie KM, Vishnivetskaya T, Podar M, Warner B, Tarr PI, Nelson DE, Fortenberry JD, Holland MJ, Burr SE, Shannon WD, Sodergren E, Weinstock GM. 2013. Biogeography of the ecosystems of the healthy human body. Genome Biol 14:R1
  • Zhou X, Hansmann MA, Davis CC, Suzuki H, Brown CJ, Schütte U, Pierson J, Forney LJ. 2010b. The vaginal bacterial communities of Japanese women resemble those of women in other racial groups. FEMS Immunol Med Microbiol 58:169181.
  • Zimmer C. 2010. How microbes defend and define us. New York Times, New York Edition, July 13, 2010, Page D1.