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Gorgon and pathwalking: Macromolecular modeling tools for subnanometer resolution density maps†
Version of Record online: 12 JUN 2012
Copyright © 2012 Wiley Periodicals, Inc.
Special Issue: The 2010 Cryo-EM Modeling Challenge
Volume 97, Issue 9, pages 655–668, September 2012
How to Cite
Baker, M. L., Baker, M. R., Hryc, C. F., Ju, T. and Chiu, W. (2012), Gorgon and pathwalking: Macromolecular modeling tools for subnanometer resolution density maps. Biopolymers, 97: 655–668. doi: 10.1002/bip.22065
- Issue online: 12 JUN 2012
- Version of Record online: 12 JUN 2012
- Accepted manuscript online: 5 APR 2012 02:43AM EST
- Manuscript Accepted: 1 MAR 2012
- Manuscript Revised: 29 FEB 2012
- Manuscript Received: 16 NOV 2011
- National Center for Research Resources. Grant Number: P41RR002250
- National Institute of General Medical Science. Grant Number: R01GM079429
- National Science Foundation. Grant Numbers: IIS-0705644, IIS-0705474
- Keck Center and Gulf Coast Consortia. Grant Number: T15LM007093
Additional Supporting Information may be found in the online version of this article.
|BIP_22065_sm_SuppFig1.tif||1290K||Supplemental Figure 1. SSEHunter results at different resolutions. Results from SSEHunter on the ϵ15 gp7 density map are shown at three different resolutions. SSEs are shown in the density map (left column) and overlaid on the known structural model (right column).|
|BIP_22065_sm_SuppTab1.tif||327K||Supplemental Table 1. De novo modeling summary. A brief summary of the model building methods is shown for our de novo model building tools. The “de novo” column refers to our original modeling tools developed while building models for the 4Å resolution structure of GroEL and 4.5Å resolution structure of ϵ15 in 2007. The next column describes our current Gorgon modeling toolkit, followed by the Pathwalking tools in the final column.|
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