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  1. 1
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  2. 2
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  20. 20
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  21. 21
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  23. 23
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  24. 24
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  25. 25
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  26. 26
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  27. 27
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  28. 28
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  29. 29
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  30. 30
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  31. 31
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  32. 32
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  33. 33
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  34. 34
    Nanette R Boyle, Ryan T Gill, Tools for genome-wide strain design and construction, Current Opinion in Biotechnology, 2012, 23, 5, 666

    CrossRef

  35. 35
    Rajeev S. Assary, Linda J. Broadbelt, 2-Keto acids to branched-chain alcohols as biofuels: Application of reaction network analysis and high-level quantum chemical methods to understand thermodynamic landscapes, Computational and Theoretical Chemistry, 2011, 978, 1-3, 160

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  36. 36
    Di Wu, Qin Wang, Rajeev S. Assary, Linda J. Broadbelt, Goran Krilov, A Computational Approach To Design and Evaluate Enzymatic Reaction Pathways: Application to 1-Butanol Production from Pyruvate, Journal of Chemical Information and Modeling, 2011, 51, 7, 1634

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  37. 37
    Ru-Dong Li, Yuan-Yuan Li, Ling-Yi Lu, Cong Ren, Yi-Xue Li, Lei Liu, An improved kinetic model for the acetone-butanol-ethanol pathway of Clostridium acetobutylicum and model-based perturbation analysis, BMC Systems Biology, 2011, 5, Suppl 1, S12

    CrossRef

  38. 38
    Christopher M. Gowen, Stephen S. Fong, Applications of systems biology towards microbial fuel production, Trends in Microbiology, 2011, 19, 10, 516

    CrossRef

  39. 39
    H. Dong, W. Tao, L. Zhu, Y. Zhang, Y. Li, CAC2634-disrupted mutant of Clostridium acetobutylicum can be electrotransformed in air, Letters in Applied Microbiology, 2011, 53, 3
  40. 40
    Rajeev S. Assary, Linda J. Broadbelt, Computational screening of novel thiamine-catalyzed decarboxylation reactions of 2-keto acids, Bioprocess and Biosystems Engineering, 2011, 34, 3, 375

    CrossRef

  41. 41
    Peter Dürre, Fermentative production of butanol—the academic perspective, Current Opinion in Biotechnology, 2011, 22, 3, 331

    CrossRef

  42. 42
    Edward M Green, Fermentative production of butanol—the industrial perspective, Current Opinion in Biotechnology, 2011, 22, 3, 337

    CrossRef

  43. 43
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  44. 44
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    CrossRef

  45. 45
    Guiqin Cai, Bo Jin, Paul Monis, Chris Saint, Metabolic flux network and analysis of fermentative hydrogen production, Biotechnology Advances, 2011, 29, 4, 375

    CrossRef

  46. 46
    Caroline B Milne, James A Eddy, Ravali Raju, Soroush Ardekani, Pan-Jun Kim, Ryan S Senger, Yong-Su Jin, Hans P Blaschek, Nathan D Price, Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052, BMC Systems Biology, 2011, 5, 1, 130

    CrossRef

  47. 47
    Scott B. Crown, Dinesh C. Indurthi, Woo Suk Ahn, Jungik Choi, Eleftherios T. Papoutsakis, Maciek R. Antoniewicz, Resolving the TCA cycle and pentose-phosphate pathway of Clostridium acetobutylicum ATCC 824: Isotopomer analysis, in vitro activities and expression analysis, Biotechnology Journal, 2011, 6, 3
  48. 48
    Si-Yu Li, Ranjan Srivastava, Richard S. Parnas, Study of in situ 1-butanol pervaporation from A-B-E fermentation using a PDMS composite membrane: Validity of solution-diffusion model for pervaporative A-B-E fermentation, Biotechnology Progress, 2011, 27, 1
  49. 49
    H. Dong, Y. Zhang, Y. Zhu, G. Luan, R. Wang, W. Tao, Y. Li, Comprehensive Biotechnology, 2011,

    CrossRef

  50. 50
    M. Köpke, P. Dürre, Handbook of Biofuels Production, 2011,

    CrossRef

  51. 51
    Vicente Acuña, Alberto Marchetti-Spaccamela, Marie-France Sagot, Leen Stougie, A note on the complexity of finding and enumerating elementary modes, Biosystems, 2010, 99, 3, 210

    CrossRef

  52. 52
    Ryan S. Senger, Biofuel production improvement with genome-scale models: The role of cell composition, Biotechnology Journal, 2010, 5, 7
  53. 53
    Christopher M. Gowen, Stephen S. Fong, Exploring Biodiversity for Cellulosic Biofuel Production, Chemistry & Biodiversity, 2010, 7, 5
  54. 54
    He Huang, Hui Liu, Yi-Ru Gan, Genetic modification of critical enzymes and involved genes in butanol biosynthesis from biomass, Biotechnology Advances, 2010, 28, 5, 651

    CrossRef

  55. 55
    Fahimeh Salimi, Kai Zhuang, Radhakrishnan Mahadevan, Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing, Biotechnology Journal, 2010, 5, 7
  56. 56
    Laura R. Jarboe, Xueli Zhang, Xuan Wang, Jonathan C. Moore, K. T. Shanmugam, Lonnie O. Ingram, Metabolic Engineering for Production of Biorenewable Fuels and Chemicals: Contributions of Synthetic Biology, Journal of Biomedicine and Biotechnology, 2010, 2010, 1

    CrossRef

  57. 57
    Keng Cher Soh, Vassily Hatzimanikatis, Network thermodynamics in the post-genomic era, Current Opinion in Microbiology, 2010, 13, 3, 350

    CrossRef

  58. 58
    María Rodríguez-Moyá, Ramon Gonzalez, Systems biology approaches for the microbial production of biofuels, Biofuels, 2010, 1, 2, 291

    CrossRef

  59. 59
    Erwin P. Gianchandani, Arvind K. Chavali, Jason A. Papin, The application of flux balance analysis in systems biology, Wiley Interdisciplinary Reviews: Systems Biology and Medicine, 2010, 2, 3
  60. 60
    Caroline B. Milne, Pan-Jun Kim, James A. Eddy, Nathan D. Price, Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology, Biotechnology Journal, 2009, 4, 12
  61. 61
    Matthew A Oberhardt, Bernhard Ø Palsson, Jason A Papin, Applications of genome-scale metabolic reconstructions, Molecular Systems Biology, 2009, 5, 1
  62. 62
    P. M. Boyle, P. A. Silver, Harnessing nature's toolbox: regulatory elements for synthetic biology, Journal of The Royal Society Interface, 2009, 6, Suppl_4, S535

    CrossRef

  63. 63
    Y. Zhang, I. Thiele, D. Weekes, Z. Li, L. Jaroszewski, K. Ginalski, A. M. Deacon, J. Wooley, S. A. Lesley, I. A. Wilson, B. Palsson, A. Osterman, A. Godzik, Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima, Science, 2009, 325, 5947, 1544

    CrossRef

  64. You have free access to this content64
    Ryan S. Senger, Eleftherios T. Papoutsakis, Genome-scale model for Clostridium acetobutylicum: Part II. Development of specific proton flux states and numerically determined sub-systems, Biotechnology and Bioengineering, 2008, 101, 5
  65. 65
    Jingbo Zhao, Congcong Lu, Chih-Chin Chen, Shang-Tian Yang, Biological Production of Butanol and Higher Alcohols,
  66. 66
    Yi Wang, Holger Janssen, Hans P. Blaschek, Fermentative Biobutanol Production: An Old Topic with Remarkable Recent Advances,