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Characterization of combinatorial patterns generated by multiple two-component sensors in E. coli that respond to many stimuli

Authors

  • Elizabeth J. Clarke,

    1. Graduate Group in Biophysics, University of California, San Francisco, San Francisco, California 94158
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  • Christopher A. Voigt

    Corresponding author
    1. Graduate Group in Biophysics, University of California, San Francisco, San Francisco, California 94158
    2. Department of Pharmaceutical Chemistry, University of California, San Francisco, Box 2540, Room 408C, 1700 4th Street, San Francisco, California 94158; telephone: 1-415-502-7050; fax: 1-415-502-4690
    • Department of Pharmaceutical Chemistry, University of California, San Francisco, Box 2540, Room 408C, 1700 4th Street, San Francisco, California 94158; telephone: 1-415-502-7050; fax: 1-415-502-4690.
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Abstract

Two-component systems enable bacteria to sense changes in their environment and adjust gene expression in response. Multiple two-component systems could function as a combinatorial sensor to discriminate environmental conditions. A combinatorial sensor is composed of a set of sensors that are non-specifically activated to different magnitudes by many stimuli, such that their collective activity pattern defines the signal. Using promoter reporters and flow cytometry, we measured the response of three two-component systems in Escherichia coli that have been previously reported to respond to many environmental stimuli (EnvZ/OmpR, CpxA/CpxR, and RcsC/RcsD/RcsB). A chemical library was screened for the ability to activate the sensors and 13 inducers were identified that produce different patterns of sensor activity. The activities of the three systems are uncorrelated with each other and the osmolarity of the inducing media. Five of the seven possible non-trivial patterns generated by three sensors are observed. This data demonstrate one mechanism by which bacteria are able to use a limited set of sensors to identify a diverse set of compounds and environmental conditions. Biotechnol. Bioeng. 2011; 108:666–675. © 2010 Wiley Periodicals, Inc.

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