• 1
    D. S. Goodsell ( 2009) The Machinery of Life, 2nd ed., Springer, New York.
  • 2
    V. R. Racaniello, in D. M. Knipe, P. M. Howley, Eds. ( 2001) Picornaviridae: The Viruses and Their Replication, Fields Virology, Lippincol, Williams & Wilkins, Philadelphia.
  • 3
    Y. He, S. Mueller, P. R. Chipman, C. M. Bator, X. Peng, V. D. Bowman, S. Mukhopadhyay, E. Wimmer, R. J. Kuhn, M. G. Rossmann ( 2003) Complexes of poliovirus serotypes with their common cellular receptor, CD155. J. Virol., 77, 48274835.
  • 4
    A. V. Paul, in B. L. Semler, E. Wimmer, Eds. ( 2002) Possible Unifying Mechanism of Picornavirus Genome Replication, Molecular Biology of Picornaviruses, ASM Press, Washington, DC, pp. 227246.
  • 5
    O. M. Kew, R. W. Sutter, E. M. de Gourville, W. R. Dowdle, M. A. Pallansch ( 2005) Vaccine-derived polioviruses and the endgame strategy for global polio eradication. Annu. Rev. Microbiol., 59, 587635.
  • 6
    A. Harris, G. Cardone, D. C. Winkler, J. B. Heymann, M. Brecher, J. M. White, A. C. Steven ( 2006) Influenza virus pleiomorphy characterized by cryoelectron tomography. Proc. Natl. Acad. Sci. USA, 103, 1912319127.
  • 7
    B. Sha, M. Luo ( 1997) Structure of a bifunctional membrane-RNA binding protein, influenza virus matrix protein M1. Nat. Struct. Biol., 4, 239244.
  • 8
    T. Noda, H. Sagara, A. Yen, A. Takada, H. Kida, R. H. Cheng, Y. Kawaoka ( 2006) Architecture of ribonucleoprotein complexes in influenza A virus particles. Nature, 439, 490492.
  • 9
    J. Martin-Benito, E. Area, J. Ortega, O. Llorca, J. M. Valpuesta, J. L. Carrascosa, J. Ortin ( 2001) Three-dimensional reconstruction of a recombinant influenza virus ribonucleoprotein particle. EMBO Rep., 2, 313317.
  • 10
    E. Torreira, G. Schoehn, Y. Fernandez, N. Jorba, R. W. Ruigrok, S. Cusack, J. Ortin, O. Llorca ( 2007) Three-dimensional model for the isolated recombinant influenza virus polymerase heterotrimer. Nucleic Acids Res., 35, 37743783.
  • 11
    E. Area, J. Martin-Benito, P. Gastaminza, E. Torreira, J. M. Valpuesta, J. L. Carrascosa, J. Ortin ( 2004) 3D structure of the influenza virus polymerase complex: Localization of subunit domains. Proc. Natl. Acad. Sci. USA, 101, 308313.
  • 12
    J. A. Briggs, M. N. Simon, I. Gross, H. G. Krausslich, S. D. Fuller, V. M. Vogt, M. C. Johnson ( 2004) The stoichiometry of Gag protein in HIV-1. Nat. Struct. Mol. Biol., 11, 672675.
  • 13
    J. A. Briggs, K. Grunewald, B. Glass, F. Forster, H. G. Krausslich, S. D. Fuller ( 2006) The mechanism of HIV-1 core assembly: Insights from three-dimensional reconstructions of authentic virions. Structure, 14, 1520.
  • 14
    J. A. Briggs, T. Wilk, R. Welker, H. G. Krausslich, S. D. Fuller ( 2003) Structural organization of authentic, mature HIV-1 virions and cores. EMBO J., 22, 17071715.
  • 15
    B. K. Ganser, S. Li, V. Y. Klishko, J. T. Finch, W. I. Sundquist ( 1999) Assembly and analysis of conical models for the HIV-1 core. Science, 283, 8083.
  • 16
    P. Zhu, J. Liu, J. BessJr., E. Chertova, J. D. Lifson, H. Grise, G. A. Ofek, K. A. Taylor, K. H. Roux ( 2006) Distribution and three-dimensional structure of AIDS virus envelope spikes. Nature, 441, 847852.
  • 17
    E. Fenouillet, J. C. Gluckman, I. M. Jones ( 1994) Functions of HIV envelope glycans. Trends Biochem. Sci., 19, 6570.
  • 18
    S. R. Wu, R. Loving, B. Lindqvist, H. Hebert, P. J. Koeck, M. Sjoberg, H. Garoff ( 2010) Single-particle cryoelectron microscopy analysis reveals the HIV-1 spike as a tripod structure. Proc. Natl. Acad. Sci. USA, 107, 1884418849.
  • 19
    J. Liu, A. Bartesaghi, M. J. Borgnia, G. Sapiro, S. Subramaniam ( 2008) Molecular architecture of native HIV-1 gp120 trimers. Nature, 455, 109113.
  • 20
    W. B. Fischer ( 2003) Vpu from HIV-1 on an atomic scale: Experiments and computer simulations. FEBS Lett., 552, 3946.
  • 21
    J. F. Roeth, K. L. Collins ( 2006) Human immunodeficiency virus type 1 Nef: Adapting to intracellular trafficking pathways. Microbiol. Mol. Biol. Rev., 70, 548563.
  • 22
    A. Seelamgari, A. Maddukuri, R. Berro, C. de la Fuente, K. Kehn, L. Deng, S. Dadgar, M. E. Bottazzi, E. Ghedin, A. Pumfery, F. Kashanchi ( 2004) Role of viral regulatory and accessory proteins in HIV-1 replication. Front. Biosci., 9, 23882413.
  • 23
    D. E. Ott ( 2008) Cellular proteins detected in HIV-1. Rev. Med. Virol., 18, 159175.
  • 24
    C. P. Hill, D. Worthylake, D. P. Bancroft, A. M. Christensen, W. I. Sundquist ( 1996) Crystal structures of the trimeric human immunodeficiency virus type 1 matrix protein: Implications for membrane association and assembly. Proc. Natl. Acad. Sci. USA, 93, 30993104.
  • 25
    J. A. Briggs, M. C. Johnson, M. N. Simon, S. D. Fuller, V. M. Vogt ( 2006) Cryo-electron microscopy reveals conserved and divergent features of gag packing in immature particles of Rous sarcoma virus and human immunodeficiency virus. J. Mol. Biol., 355, 157168.
  • 26
    O. Pornillos, B. K. Ganser-Pornillos, M. Yeager ( 2011) Atomic-level modelling of the HIV capsid. Nature, 469, 424427.
  • 27
    A. D. Frankel, J. A. Young ( 1998) HIV-1: Fifteen proteins and an RNA. Annu. Rev. Biochem., 67, 125.
  • 28
    L. Pappalardo, D. J. Kerwood, I. Pelczer, P. N. Borer ( 1998) Three-dimensional folding of an RNA hairpin required for packaging HIV-1. J. Mol. Biol., 282, 801818.
  • 29
    R. S. Russell, C. Liang, M. A. Wainberg ( 2004) Is HIV-1 RNA dimerization a prerequisite for packaging? Yes, no, probably? Retrovirology, 1, 23.
  • 30
    I. Konstantinov, Y. Stefanov, A. Kovalesky, Y. Voronin ( 2011) Visualization Challenge 2010: Human immunodeficiency virus 3D. Science, 331, 848849.
  • 31
    T. Jacks, M. D. Power, F. R. Masiarz, P. A. Luciw, P. J. Barr, H. E. Varmus ( 1988) Characterization of ribosomal frameshifting in HIV-1 gag-pol expression. Nature, 331, 280283.
  • 32
    D. S. Goodsell ( 2011) Eukaryotic cell panorama. Biochem. Mol. Biol. Educ., 39, 91101.