Concurrency and Computation: Practice and Experience

Cover image for Vol. 26 Issue 13

Special Issue: Special issue on XSEDE13

10 September 2014

Volume 26, Issue 13

Pages i–ii, 2107–2343

Issue edited by: Nancy Wilkins-Diehr, Amit Majumdar

  1. Issue Information

    1. Top of page
    2. Issue Information
    3. Editorial
    4. Special Issue Papers
    1. You have free access to this content
      Issue Information (pages i–ii)

      Article first published online: 25 JUL 2014 | DOI: 10.1002/cpe.3145

  2. Editorial

    1. Top of page
    2. Issue Information
    3. Editorial
    4. Special Issue Papers
    1. You have free access to this content
      XSEDE13 Special Issue Conference Publications (pages 2107–2111)

      Nancy Wilkins-Diehr and Amit Majumdar

      Article first published online: 2 JUN 2014 | DOI: 10.1002/cpe.3308

  3. Special Issue Papers

    1. Top of page
    2. Issue Information
    3. Editorial
    4. Special Issue Papers
    1. Optimizing high performance computing workflow for protein functional annotation (pages 2112–2121)

      Larissa Stanberry, Bhanu Rekepalli, Yuan Liu, Paul Giblock, Roger Higdon, Elizabeth Montague, William Broomall, Natali Kolker and Eugene Kolker

      Article first published online: 24 APR 2014 | DOI: 10.1002/cpe.3264

    2. Calibrating building energy models using supercomputer trained machine learning agents (pages 2122–2133)

      Jibonananda Sanyal, Joshua New, Richard E. Edwards and Lynne Parker

      Article first published online: 31 MAR 2014 | DOI: 10.1002/cpe.3267

    3. Fast construction of nanosecond level snapshots of financial markets (pages 2149–2156)

      Jiading Gai, Dong Ju Choi, David O'Neal, Mao Ye and Robert S. Sinkovits

      Article first published online: 12 FEB 2014 | DOI: 10.1002/cpe.3220

    4. Enabling large-scale next-generation sequence assembly with Blacklight (pages 2157–2166)

      M. Brian Couger, Lenore Pipes, Fabio Squina, Rolf Prade, Adam Siepel, Robert Palermo, Michael G. Katze, Christopher E. Mason and Philip D. Blood

      Article first published online: 18 MAR 2014 | DOI: 10.1002/cpe.3231

    5. Using Lucene to index and search the digitized 1940 US Census (pages 2167–2177)

      Liana Diesendruck, Rob Kooper, Luigi Marini and Kenton McHenry

      Article first published online: 6 MAR 2014 | DOI: 10.1002/cpe.3250

    6. Comprehensive, open-source resource usage measurement and analysis for HPC systems (pages 2191–2209)

      James C. Browne, Robert L. DeLeon, Abani K. Patra, William L. Barth, John Hammond, Matthew D. Jones, Thomas R. Furlani, Barry I. Schneider, Steven M. Gallo, Amin Ghadersohi, Ryan J. Gentner, Jeffrey T. Palmer, Nikolay Simakov, Martins Innus, Andrew E. Bruno, Joseph P. White, Cynthia D. Cornelius, Thomas Yearke, Kyle Marcus, Gregor von Laszewski and Fugang Wang

      Article first published online: 6 MAR 2014 | DOI: 10.1002/cpe.3245

    7. You have full text access to this OnlineOpen article
    8. FluMapper: a cyberGIS application for interactive analysis of massive location-based social media (pages 2253–2265)

      Anand Padmanabhan, Shaowen Wang, Guofeng Cao, Myunghwa Hwang, Zhenhua Zhang, Yizhao Gao, Kiumars Soltani and Yan Liu

      Article first published online: 16 MAY 2014 | DOI: 10.1002/cpe.3287

    9. Experiences building Globus Genomics: a next-generation sequencing analysis service using Galaxy, Globus, and Amazon Web Services (pages 2266–2279)

      Ravi K. Madduri, Dinanath Sulakhe, Lukasz Lacinski, Bo Liu, Alex Rodriguez, Kyle Chard, Utpal J. Dave and Ian T. Foster

      Article first published online: 8 APR 2014 | DOI: 10.1002/cpe.3274

    10. Advancements of the UltraScan scientific gateway for open standards-based cyberinfrastructures (pages 2280–2291)

      Shahbaz Memon, Morris Riedel, Florian Janetzko, Borries Demeler, Gary Gorbet, Suresh Marru, Andrew Grimshaw, Lahiru Gunathilake, Raminder Singh, Norbert Attig and Thomas Lippert

      Article first published online: 13 MAR 2014 | DOI: 10.1002/cpe.3251

    11. Game design for bioinformatics and cyberinfrastructure learning: a parallel computing case study (pages 2303–2315)

      Daniel Perry, John Robinson, Stephanie Cruz, Cecilia Aragon, Jeanne Ting Chowning and Mette Peters

      Article first published online: 27 MAR 2014 | DOI: 10.1002/cpe.3261

    12. INSTANCES: incorporating computational scientific thinking advances into education and science courses (pages 2316–2328)

      Rubin Landau, Greg Mulder, Raquell Holmes, Sofya Borinskaya, NamHwa Kang and Cristian Bordeianu

      Article first published online: 2 JUN 2014 | DOI: 10.1002/cpe.3288

    13. Development of undergraduate and graduate programs in computational science (pages 2329–2335)

      Péter Molnár, David M. Toth and Rachel E. Vincent-Finley

      Article first published online: 14 MAR 2014 | DOI: 10.1002/cpe.3227

    14. Training, education, and outreach—raising the bar (pages 2336–2343)

      Linda Akli, Samuel L. Moore, Lorna I. Rivera and Patricia J. Teller

      Article first published online: 6 MAR 2014 | DOI: 10.1002/cpe.3230