• 1
    Levitan IB, Kaczmarek LK. The neuron: cell and molecular biology. 3rd ed. Oxford: Oxford University Press; 2002.
  • 2
    Capowski JJ. Computer techniques in neuroanatomy. New York: Plenum Press; 1989.
  • 3
    Al-Kofahi KA, Lasek S, Szarowski DH, Pace CJ, Nagy G, Turner JN, Roysam B. Rapid automated three-dimensional tracing of neurons from confocal image stacks. IEEE Trans Inform Technol Biomed 2002; 6: 171187.
  • 4
    Houtsmuller AB, Smeulders AWM, van der Voort HTM, Oud JL, Nanninga N. The homing cursor: a tool for three-dimensional chromosome analysis. Cytometry 1993; 14: 501509.
  • 5
    Can A, Shen H, Turner JN, Tanenbaum HL, Roysam B. Rapid automated tracing and feature extraction from retinal fundus images using direct exploratory algorithms. IEEE Trans Inform Technol Biomed 1999; 3: 125138.
  • 6
    Dima A, Scholz M, Obermayer K. Automatic segmentation and skeletonization of neurons from confocal microscopy images based on the 3-D wavelet transform. IEEE Trans Image Process 2002; 11: 790801.
  • 7
    Jap Tjoen San ERA, Schmidt-Michels MH, Spruijt BM, Oestreicher AB, Schotman P, Gispen WH. Quantitation of the growth-associated protein B-50/GAP-43 and neurite outgrowth in PC12 cells. J Neurosci Res 1991; 29: 149154.
  • 8
    Malgrange B, Delrée P, Rigo JM, Baron H, Moonen G. Image analysis of neuritic regeneration by adult rat dorsal root ganglion neurons in culture: quantification of the neurotoxicity of anticancer agents and of its prevention by nerve growth factor or basic fibroblast growth factor but not brain-derived neurotrophic factor or neurotrophin-3. J Neurosci Methods 1994; 53: 111122.
  • 9
    Kim J, Gillies D. Automatic morphometric analysis of neural cells. Mach Graph Vis 1998; 7: 693709.
  • 10
    Bilsland J, Rigby M, Young L, Harper S. A rapid method for semi-quantitative analysis of neurite outgrowth from chick DRG explants using image analysis. J Neurosci Methods 1999; 92: 7585.
  • 11
    Ventimiglia R, Jones BE, Møller A. A quantitative method for morphometric analysis in neuronal cell culture: unbiased estimation of neuron area and number of branch points. J Neurosci Methods 1995; 57: 6366.
  • 12
    Isaacs KR, Hanbauer I, Jacobowitz DM. A method for the rapid analysis of neuronal proportions and neurite morphology in primary cultures. Exp Neurol 1998; 149: 464467.
  • 13
    Rønn LCB, Ralets I, Hartz BP, Bech M, Berezin A, Berezin V, Møller A, Bock E. A simple procedure for quantification of neurite outgrowth based on stereological principles. J Neurosci Methods 2000; 100: 2532.
  • 14
    Weaver CM, Pinezich JD, Lindquist WB, Vazquez ME. An algorithm for neurite outgrowth reconstruction. J Neurosci Methods 2003; 124: 197205.
  • 15
    Sato Y, Nakajima S, Shiraga N, Atsumi H, Yoshida S, Koller T, Gerig G, Kikinis R. Three-dimensional multiscale line filter for segmentation and visualization of curvilinear structures in medical images. Med Image Anal 1998; 2: 143168.
  • 16
    Frangi AF, Niessen WJ, Hoogeveen RM, Walsum T van, Viergever MA. Model-based quantitation of 3-D magnetic resonance angiographic images. IEEE Trans Med Imaging 1999; 18: 946956.
  • 17
    Geusebroek JM, Smeulders AWM. A minimum cost approach for segmenting networks of lines. Int J Comput Vis 2001; 43: 99111.
  • 18
    Wink O, Frangi AF, Verdonck B, Viergever MA, Niessen WJ. 3D MRA coronary axis determination using a minimum cost path approach. Magn Reson Med 2002; 47: 11691175.
  • 19
    Barrett WA, Mortensen EN. Interactive live-wire boundary extraction. Med Image Anal 1996; 1: 331341.
  • 20
    Mortensen EN, Barrett WA. Interactive segmentation with intelligent scissors. Graph Models Image Process 1998; 60: 349384.
  • 21
    Falcão AX, Udupa JK, Samarasekera S, Sharma S. User-steered image segmentation paradigms: live wire and live lane. Graph Models Image Process 1998; 60: 233260.
  • 22
    Falcão AX, Udupa JK, Miyazawa FK. An ultra-fast user-steered image segmentation paradigm: live wire on the fly. IEEE Trans Med Imaging 2000; 19: 5562.
  • 23
    Steiner P, Sarria JCF, Huni B, Marsault R, Catsicas S, Hirling H. Overexpression of neuronal sec1 enhances axonal branching in hippocampal neurons. Neuroscience 2002; 113: 893905.
  • 24
    Thévenaz P, Blu T, Unser M. Interpolation revisited. IEEE Trans Med Imaging 2000; 19: 739758.
  • 25
    Meijering EHW, Niessen WJ, Viergever MA. Quantitative evaluation of convolution-based methods for medical image interpolation. Med Image Anal 2001; 5: 111126.
  • 26
    Altman DG. Practical statistics for medical research. London: Chapman & Hall; 1991.
  • 27
    Lindeberg T. Scale-space theory in computer vision. Dordrecht, The Netherlands: Kluwer Academic; 1994.
  • 28
    Strang G. Linear algebra and its applications. 3rd ed. San Diego, CA: Harcourt Brace Jovanovich; 1988.
  • 29
    Freeman WT, Adelson EH. The design and use of steerable filters. IEEE Trans Pattern Anal Mach Intell 1991; 13: 891906.
  • 30
    Cormen TH, Leiserson CE, Rivest RL, Stein C. Introduction to algorithms. 2nd ed. Cambridge, MA: MIT Press; 2001.