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LITERATURE CITED

  • 1
    Gasparetto M,Gentry T,Sebti S,O'Bryan E,Nimmanapalli R,Blaskovich MA,Bhalla K,Rizzieri D,Haaland P,Dunne J,Smith C. Identification of compounds that enhance the anti-lymphoma activity of rituximab using flow cytometric high-content screening. J Immunol Methods 2004; 292: 5971.
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    Maecker HT,Rinfret A,D'Souza P,Darden J,Roig E,Landry C,Hayes P,Birungi J,Anzala O,Garcia M,Harari A,Frank I,Baydo R,Baker M,Holbrook J,Ottinger J,Lamoreaux L,Epling CL,Sinclair E,Suni MA,Punt K,Calarota S,El-Bahi S,Alter G,Maila H,Kuta E,Cox J,Gray C,Altfeld M,Nougarede N,Boyer J,Tussey L,Tobery T,Bredt B,Roederer M,Koup R,Maino VC,Weinhold K,Pantaleo G,Gilmour J,Horton H,Sekaly RP. Standardization of cytokine flow cytometry assays. BMC Immunol 2005; 6: 13.
  • 3
    Herzenberg LA,Tung J,Moore WA,Herzenberg LA,Parks DR. Interpreting flow cytometry data: A guide for the perplexed. Nat Immunol 2006; 7: 681685.
  • 4
    Seamer LC,Bagwell CB,Barden L,Redelman D,Salzman GC,Wood JC,Murphy RF. Proposed new data file standard for flow cytometry, version FCS 3.0. Cytometry 1997; 28: 118122.
  • 5
    Taylor CF,Field D,Sansone S-A,Aerts J,Apweiler R,Ashburner M,Ball CA,Binz P-A,Bogue M,Booth T,Brazma1 A,Brinkman RR,Clark AM,Deutsch EW,Fiehn O,Fostel J,Ghazal P,Gibson F,Gray T,Grimes G,Hardy NW,Hermjakob H,JulianJrRK,Kane M,Kettner C,Kinsinger C,Kolker E,Kuiper M,Le Novère N,Leebens-Mack J,Lewis SE,Lord P,Mallon A-M,Marthandan N,Masuya H,McNally R,Mehrle A,Morrison N,Quackenbush J,Reecy JM,Robertson DG,Rocca-Serra P,Rodriguez H,Santoyo-Lopez J,Scheuermann RH,Schober D,Smith B,Snape J,Tipton K,Sterk P,Wiemann S. Promoting coherent minimum reporting requirements for biological and biomedical investigations: The MIBBI project. Nat Biotechnol 2008; 26: 889896.
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    Jones AR,Miller M,Aebersold R,Apweiler R,Ball CA,Brazma A,Degreef J,Hardy N,Hermjakob H,Hubbard SJ,Hussey P,Igra M,Jenkins H,JulianJrRK,Laursen K,Oliver SG,Paton NW,Sansone SA,Sarkans U,StoeckertJrCJ,Taylor CF,Whetzel PL,White JA,Spellman P,Pizarro A. The Functional Genomics Experiment model (FuGE): An extensible framework for standards in functional genomics. Nat Biotechnol 2007; 25: 11271133.
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    Whetzel PL,Brinkman RR,Causton HC,Fan L,Field D,Fostel J,Fragoso G,Gray T,Heiskanen M,Hernandez-Boussard T,Morrison N,Parkinson H,Rocca-Serra P,Sansone SA,Schober D,Smith B,Stevens R,Stoeckert CJJr,Taylor C,White J,Wood A. Development of FuGO: An ontology for functional genomics investigations. OMICS 2006; 10: 199204.
  • 8
    Baumgarth N,Roederer M. A practical approach to multicolor flow cytometry for immunophenotyping. J Immunol Methods 2000; 243: 7797.
  • 9
    Shapiro HM. 8 Buying flow cytometers, 9 building flow cytometers. In: DoeJA,DoeB,DoeCD, editors. Practical Flow Cytometry,4th ed. Hoboken, NJ: John Wiley & Sons; 2003. pp 411442.
  • 10
    Shapiro HM. 4.6 How flow cytometers work—Flow systems. In: DoeJA,DoeB,DoeCD, editors. Practical Flow Cytometry,4th ed. Hoboken, NJ: John Wiley & Sons; 2006. pp 166180.
  • 11
    Ball CA,Brazma A,Causton H,Chervitz S,Edgar R,Hingamp P,Matese JC,Parkinson H,Quackenbush J,Ringwald M,Sansone S-A,Sherlock G,Spellman P,Stoeckert C,Tateno Y,Taylor R,White J,Winegarden N. Submission of microarray data to public repositories. PLoS Biol 2004; 2: E317.
  • 12
    Bourne P. Will a biological database be different from a biological journal? PLoS Comput Biol 2005; 1: 179181.
  • 13
    Brazma A,Hingamp P,Quackenbush J,Sherlock G,Spellman P,Stoeckert C,Aach J,Ansorge W,Ball CA,Causton HC,Gaasterland T,Glenisson P,Holstege FC,Kim IF,Markowitz V,Matese JC,Parkinson H,Robinson A,Sarkans U,Schulze-Kremer S,Stewart J,Taylor R,Vilo J,Vingron M. Minimum information about a microarray experiment (MIAME)—Toward standards for microarray data. Nat Genet 2001; 29: 365371.
  • 14
    Le Novere N,Finney A,Hucka M,Bhalla US,Campagne F,Collado-Vides J,Crampin EJ,Halstead M,Klipp E,Mendes P,Nielsen P,Sauro H,Shapiro B,Snoep JL,Spence HD,Wanner BL. Minimum information requested in the annotation of biochemical models (MIRIAM). Nat Biotechnol 2005; 23: 15091515.
  • 15
    Deutsch EW,Ball CA,Bova GS,Brazma A,Bumgarner RE,Campbell D,Causton HC,Christiansen J,Davidson D,Eichner LJ,Goo YA,Grimmond S,Henrich T,Johnson MH,Korb M,Mills JC,Oudes A,Parkinson HE,Pascal LE,Quackenbush J,Ramialison M,Ringwald M,Sansone SA,Sherlock G,StoeckertJrCJ,Swedlow J,Taylor RC,Walashek L,Zhou Y,Liu AY,True LD. Development of the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). OMICS 2006; 10: 205208.
  • 16
    Plint AC,Moher D,Morrison A,Schulz K,Altman DG,Hill C,Gaboury I. Does the CONSORT checklist improve the quality of reports of randomised controlled trials? A systematic review. Med J Aust 2006; 185: 263267.
  • 17
    Burgoon LD. The need for standards, not guidelines, in biological data reporting and sharing. Nat Biotechnol 2006; 24: 13691373.
  • 18
    Quackenbush J. Data standards for ‘omic’ science. Nat Biotechnol 2004; 22: 613614.
  • 19
    Spidlen J,Gentleman RC,Haaland PD,Langille M,Le Meur N,Ochs MF,Schmitt C,Smith CA,Treister AS,Brinkman RR. Data standards for flow cytometry. OMICS 2006; 10: 209214.
  • 20
    Leif RC. CytometryML, a data standard, which has been designed to interface with other standards. In: Farkas DL,Leif RC,Nicolau DV. Imaging, manipulation and analysis of biomolecules, cells and tissues, V. 2007; Proc of SPIE, vol 6441: doi: 10.1117/12.699617.