SEARCH

SEARCH BY CITATION

References

  • Araki, H., R. S. Waples, W. R. Ardren, B. Cooper, and M. S. Blouin. 2007. Effective population size of steelhead trout: influence of variance in reproductive success, hatchery programs, and genetic compensation between life-history forms. Mol. Ecol. 16:953966.
  • Behnke, R. J. 2002. Trout and salmon of North America. The Free Press, New York, NY.
  • Da, Y., and S. Wang. 2013. Joint genomic prediction and estimation of variance components of additive and dominance effects using SNP markers. International Plant & Animal Genome XXI, San Diego, CA.
  • Da, Y., C. Wang, S. Wang, and G. Hu. 2014. Mixed model methods for genomic prediction and variance component estimation of additive and dominance effects using SNP markers. PLoS ONE 9:e87666.
  • Dellefors, C., and U. Faremo. 1988. Early sexual maturation in males of wild sea trout, Salmo trutta L., inhibits smoltification. J. Fish Biol. 33:741749.
  • Dempster, E. R., and I. M. Lerner. 1950. Heritability of threshold characters. Genetics 35:212236.
  • Dickhoff, W. W., B. R. Beckman, D. A. Larsen, C. Duan, and S. Moriyama. 1997. The role of growth in endocrine regulation of salmon smoltification. Fish Physiol. Biochem. 17:231236.
  • Dingle, H. 1991. Evolutionary genetics of animal migration. Am. Zool. 31:253264.
  • Docker, M., and D. Heath. 2003. Genetic comparison between sympatric anadromous steelhead and freshwater resident rainbow trout in British Columbia, Canada. Conserv. Genet. 4:227231.
  • Gianola, D., and J. Foulley. 1983. Sire evaluation for ordered categorical data with a threshold model. Genet. Sel. Evol. 15:201224.
  • Goddard, M. E., B. J. Hayes, and T. H. E. Meuwissen. 2011. Using the genomic relationship matrix to predict the accuracy of genomic selection. J. Anim. Breed. Genet. 128:409421.
  • Hayes, B., and M. Goddard. 2010. Genome-wide association and genomic selection in animal breeding. Genome 53:876883.
  • Hayes, B. J., P. J. Bowman, A. J. Chamberlain, and M. E. Goddard. 2009. Invited review: genomic selection in dairy cattle: progress and challenges. J. Dairy Sci. 92:433443.
  • Hecht, B. C., F. P. Thrower, M. C. Hale, M. R. Miller, and K. M. Nichols. 2012. Genetic architecture of migration-related traits in rainbow and steelhead trout, Oncorhynchus mykiss. G3 2:11131127.
  • Hecht, B. C., N. R. Campbell, D. E. Holecek, and S. R. Narum. 2013. Genome-wide association reveals genetic basis for the propensity to migrate in wild populations of rainbow and steelhead trout. Mol. Ecol. 22:30613076.
  • Hoar, W. S. 1976. Smolt transformation: evolution, behavior, and physiology. J. Fish. Res. Board Can. 33:12331252.
  • Hoar, W. S. 1988. The physiology of smolting salmon. Pp. 275344 in W. S. Hoar and D. J. Randall, eds. Fish physiology. Academic Press, San Diego, CA.
  • Hoffmann, A. A., and J. Merila. 1999. Heritable variation and evolution under favourable and unfavourable conditions. Trends Ecol. Evol. 14:96101.
  • Holecek, D. E., D. L. Scarnecchia, and S. E. Miller. 2012. Smoltification in an impounded, adfluvial redband trout population upstream from an impassable dam: does it persist? Trans. Am. Fish. Soc. 141:6875.
  • Kadarmideen, H. N., R. Thompson, and G. Simm. 2000. Linear and threshold model genetic parameters for disease, fertility and milk production in dairy cattle. Anim. Sci. 71:411419.
  • Lee, S. H., N. R. Wray, M. E. Goddard, and P. M. Visscher. 2011. Estimating missing heritability for disease from genome-wide association studies. Am. J. Hum. Genet. 88:294305.
  • Lee, S. H., J. Yang, M. E. Goddard, P. M. Visscher, and N. R. Wray. 2012. Estimation of pleiotropy between complex diseases using single-nucleotide polymorphism-derived genomic relationships and restricted maximum likelihood. Bioinformatics 28:25402542.
  • Lynch, M., and B. Walsh. 1998. Chapter 25 Threshold characters. Pp. 727744 in M. Lynch and B. Walsh, eds. Genetics and analysis of quantitative traits. Sinauer, Sunderland, MA.
  • Ma, L., H. B. Runesha, D. Dvorkin, J. R. Garbe, and Y. Da. 2008. Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genomewide association studies. BMC Bioinformatics 9:14712105.
  • Miller, M. R., J. P. Brunelli, P. A. Wheeler, S. Liu, C. E. III Rexroad, Y. Palti, et al. 2012. A conserved haplotype controls parallel adaptation in geographically distant salmonid populations. Mol. Ecol. 21:237249.
  • Narum, S. R., C. Contor, A. Talbot, and M. S. Powell. 2004. Genetic divergence of sympatric resident and anadromous forms of Oncorhynchus mykiss in the Walla Walla River, USA. J. Fish Biol. 65:471488.
  • Nichols, K. M., A. F. Edo, P. A. Wheeler, and G. H. Thorgaard. 2008. The genetic basis of smoltification-related traits in Oncorhynchus mykiss. Genetics 179:15591575.
  • Olsen, J., K. Wuttig, D. Fleming, E. Kretschmer, and J. Wenburg. 2006. Evidence of partial anadromy and resident-form dispersal bias on a fine scale in populations of Oncorhynchus mykiss. Conserv. Genet. 7:613619.
  • Pascual, M., M. Kinnison, and C. Riva Rossi. 2002. First documented case of anadromy in a population of introduced rainbow trout in Patagonia, Argentina: response to comment. Trans. Am. Fish. Soc. 131:585588.
  • R Core Team 2012. R:a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.
  • Richter-Boix, A., M. Quintela, M. Kierczak, M. Franch, and A. Laurila. 2013. Fine-grained adaptive divergence in an amphibian: genetic basis of phenotypic divergence and the role of nonrandom gene flow in restricting effective migration among wetlands. Mol. Ecol. 22:13221340.
  • Stefansson, S. O., B. T. Björnsson, L. O. Ebbesson, S. D. McCormick. 2008. Smoltification. Pp. 639681 in Fish larval physiology. R. N. Finn, B. G. Kapoor, eds. Science Publisher Inc. Enfiled(NH) & IBH Publishing Co. Pvt. Ltd., New Delhi, India.
  • Thrower, F., C. III Guthrie, J. Nielsen, and J. Joyce. 2004a. A comparison of genetic variation between an anadromous steelhead, Oncorhynchus mykiss, population and seven derived populations sequestered in freshwater for 70 years. Environ. Biol. Fishes 69:111125.
  • Thrower, F. P., J. J. Hard, and J. E. Joyce. 2004b. Genetic architecture of growth and early life-history transitions in anadromous and derived freshwater populations of steelhead. J. Fish Biol. 65:286307.
  • VanRaden, P. 2008. Efficient methods to compute genomic predictions. J. Dairy Sci. 91:44144423.
  • Wang, C., D. Prakapenka, S. Wang, H. B. Runesha, and Y. Da. 2013. GVCBLUP: a computer package for genomic prediction and variance component estimation of additive and dominance effects using SNP markers. Version 3.7. Department of Animal Science, University of Minnesota, Saint Paul, MN.
  • Yang, J., S. H. Lee, M. E. Goddard, and P. M. Visscher. 2011. GCTA: a tool for genomewide complex trait analysis. Am. J. Hum. Genet. 88:7682.
  • Zimmerman, C. E., and G. H. Reeves. 2000. Population structure of sympatric anadromous and nonanadromous Oncorhynchus mykiss: evidence from spawning surveys and otolith microchemistry. Can. J. Fish. Aquat. Sci. 57:21522162.