Funding Information This research was made possible by funding from the National Sciences and Engineering Research Council of Canada discovery grants to J. B. (strategic grant #321969 and discovery grant #46273).
Large-scale asymmetric introgression of cytoplasmic DNA reveals Holocene range displacement in a North American boreal pine complex
Version of Record online: 6 JUL 2012
© 2012 The Authors. Ecology and Evolution published by Blackwell Publishing Ltd.
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Ecology and Evolution
Volume 2, Issue 8, pages 1853–1866, August 2012
How to Cite
Godbout, J., Yeh, F. C. and Bousquet, J. (2012), Large-scale asymmetric introgression of cytoplasmic DNA reveals Holocene range displacement in a North American boreal pine complex. Ecology and Evolution, 2: 1853–1866. doi: 10.1002/ece3.294
- Issue online: 6 AUG 2012
- Version of Record online: 6 JUL 2012
- Manuscript Accepted: 9 MAY 2012
- Manuscript Revised: 8 MAY 2012
- Manuscript Received: 24 JAN 2012
- National Sciences and Engineering Research Council of Canada. Grant Numbers: #321969, #46273
- 1949. Introgressive hybridization. John Wiley and Sons, New York. 109 p. .
- 1938. Hybridization in Tradescantia. III. The evidence for introgressive hybridization. Am. J. Bot. 25:396–402. , and .
- 1989. Holocene climatic trends in Canada with special reference to the Hypsithermal interval. Pp. 520–528 in R. J. Fulton , ed. Quaternary geology of Canada and Greenland. Geological Survey of Canada, Ottawa, Ontario, Canada. , , and .
- 2009. Molecular and evolutionary history of melanism in North American gray wolves. Science 323:1339–1343. , , , , , and , et al.
- 2004. Transfer and origin of adaptations through natural hybridization: were Anderson and Stebbins right? Plant Cell 16:562–570.
- 1998. Paleoclimate simulations for North America over the past 21,000 years: features of the simulated climate and comparisons with paleoenvironmental data. Quatern. Sci. Rev. 17:549–585. , , , , , and , et al.
- 1996. Field guide to ecosites of west-central Alberta. The University of British Columbia Press, Vancouver, British Columbia, Canada, 380 p. , , and .
- 2006. Contrasting effects of long distance seed dispersal on genetic diversity during range expansion. J. Evol. Biol. 19:12–20. , , and .
- 2011. Discordant mtDNA and cpDNA phylogenies indicate geographic speciation and reticulation as driving factors for the diversification of the genus Picea . Tree Genet. Genomes 7:469–484. , , and .
- 2003. Phylogeography of maritime pine inferred with organelle markers having contrasted inheritance. Mol. Ecol. 12:1487–1495. , and .
- 2000. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9:1657–1659. , , and .
- 2008. Bayesian spatial modeling of genetic population structure. Comput. Statistics 23:111–129. , , and .
- 1957. Geographic variation in Pinus contorta. Harvard University Press, Cambridge, MA. 118 p. .
- 1980. Genetics of lodgepole pine. U.S. Department of Agriculture, Forest Service, Washington, DC. Research paper WO-37. 57 p. .
- 1985. The late Quaternary history of lodgepole and jack pines. Can. J. For. Res. 15:749–772.
- 1966. Geographic distribution of the pines of the world. U.S. Department of Agriculture, Forest Service, Washington, DC. Miscellaneous Publication 991. 97 p. , and .
- 2008. The hidden side of invasions: massive introgression by local genes. Evolution 62:1908–1920. , , , and .
- 1987. Geographical variation of lodgepole pine in relation to population history. Am. Nat. 129:463–469. , and .
- 1983. Allozyme variability and evolution of lodgepole pine (Pinus contorta var. latifolia) and jack pine (P. banksiana) in Alberta. Can. J. Genet. Cytol. 25:57–64. , and .
- 1995. A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Mol. Ecol. 4:129–131. , , and .
- 1993. Taxonomic and population differentiation of mitochondrial diversity in Pinus banksiana and Pinus contorta . Theor. Appl. Genet. 86:573–578. , and .
- 2009. More introgression with less gene flow: chloroplast vs. mitochondrial DNA in the Picea asperata complex in China, and comparison with other conifers. Mol. Ecol. 18:1396–1407. , , and .
- 2011. Direction and extent of organelle DNA introgression between two spruce species in the Qinghai-Tibetan Plateau. New Phytol. 192:1024–1033. , , , , , and .
- 1994. Estimating the relative rates of pollen and seed migration among plant populations. Heredity 72:250–259.
- 2005. Arlequin: an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1:47–50. , , and .
- 2009. Long distance dispersal and the fate of a gene from the colonization front. J. Evol. Biol. 22:2171–2182. , , and .
- 1980. Geographical variation in the monoterpenes of Pinus contorta oleoresin. Biochem. Syst. Ecol. 8:343–359.
- 1981. Geographical variation in oleoresin monoterpene composition of Pinus contorta from natural stands and planted seed collections. Biochem. Syst. Ecol. 9:97–103.
- 2003. Diverging patterns of mitochondrial and nuclear DNA diversity in subarctic black spruce: imprint of a founder effect associated with postglacial colonization. Mol. Ecol. 12:891–901. , , , and .
- 2010. From glacial refugia to modern populations: new assemblages of organelle genomes generated by differential cytoplasmic gene flow in transcontinental black spruce. Mol. Ecol. 19:5265–5280. , , , and .
- 2005. A mitochondrial DNA minisatellite reveals the postglacial history of jack pine (Pinus banksiana), a broad-range North American conifer. Mol. Ecol. 14:3497–3512. , , , and .
- 2008. Glacial vicariance in the Pacific Northwest: evidence from a lodgepole pine mitochondrial DNA minisatellite for multiple genetically distinct and widely separated refugia. Mol. Ecol. 17:2463–2475. , , , , and .
- 2010. Phylogeographic structure of jack pine (Pinus banksiana; Pinaceae) supports the existence of a coastal glacial refugium in northeastern North America. Am. J. Bot. 97:1903–1912. , , and .
- 1989. Novel chloroplast DNA polymorphism in a sympatric region of two pines. J. Evol. Biol. 2:49–59. , , and .
- 2004. Genetic consequences of climatic oscillations in the Quaternary. Phil. Trans. R. Soc. B Biol. Sci. 359:183–195.
- 2005. Mitochondrial genome recombination in the zone of contact between two hybridizing conifers. Genetics 171:1951–1962. , and .
- 2003. Cross-species amplification of mitochondrial DNA sequence-tagged-site markers in conifers: the nature of polymorphism and variation within and among species in Picea . Theor. Appl. Genet. 106:1353–1367. , , , , , and , et al.
- 2009. Inferring the past from the present phylogeographic structure of North American forest trees: seeing the forest for the genes. Can. J. For. Res. 39:286–307. , , , and .
- 2002. A set of primers for amplification of mitochondrial DNA in Picea abies and other conifer species. Mol. Ecol. Notes 2:389–392. , , , , and .
- 1991. Hybridization and introgression in white and yellow ladyslipper orchids (Cypripedium candidum and C. pubescens). J. Hered. 82:305–318. , , and .
- 2005. Barrier to gene flow between two ecologically divergent Populus species, P. alba (white poplar) and P. tremula (European aspen): the role of ecology and life history in gene introgression. Mol. Ecol. 14:1045–1057. , , , , and .
- 1971. Atlas of United States trees, volume 1, conifers and important hardwoods. U.S. Department of Agriculture, Forest Service, Washington, DC. Miscellaneous Publication 1146, 9 p., 200 maps.
- 1990. Pinus contorta Dougl. ex. Loud. Lodgepole pine. Pp. 302–315 in R. M. Burns , and B. H. Honkala , eds. Silvics of North America I. Conifers. U.S. Department of Agriculture, Forest Service, Washington, DC. , and .
- 1991. Post-glacial population growth rates of Pinus contorta ssp. latifolia in western Canada. J. Ecol. 79:417–429. , and .
- 2001. Sequence-repeat polymorphisms exhibit the signature of recombination in lodgepole pine chloroplast DNA. Mol. Biol. Evol. 18:2136–2138. , , and .
- 2002. Chloroplast phylogeography and evolution of highly polymorphic microsatellites in lodgepole pine (Pinus contorta). Theor. Appl. Genet. 104:367–378. , , and .
- 1997. Postglacial range expansion and population growth of Picea mariana, Picea glauca and Pinus banksiana in the western interior of Canada. J. Biogeogr. 24:865–881. , and .
- 2009. A metapopulation model for the introgression from genetically modified plants into their wild relatives. Evol. Appl. 2:160–171. , , and .
- 2010. Complex patterns of hybridization between exotic and native North American poplar species. Am. J. Bot. 97:1688–1697. , , , , , , et al.
- 1956. Composition of turpentine of lodgepole x jack pine hybrids. Can. J. Bot. 34:443–457.
- 1949. Natural pine hybrids in Alberta. Can. J. Res. 27c:218–229.
- 1988. Inheritance and evolution of conifer organelle genomes. Pp. 251–264 in J. Hanover , and D. E. Keathley , eds. Genetic manipulation of woody plants. Plenum Press, New York. , and .
- 2010. Vegan: Community ecology package. R package version 1.17-2. Available at http://CRAN.R-project.org/package=vegan. , , , , , and , et al.
- 1971. Chemosystematic studies in the genus Pinus: the leaf oil of Pinus contorta var. latifolia . Can. J. Bot. 49:1201–1210. , and .
- 1997. Natural hybridization between black spruce and red spruce. Mol. Ecol. 6:725–734. , and .
- 2009. Gene flow and species delimitation. Trends Ecol. Evol. 24:386–393. , and .
- 2005. Comparative organization of chloroplast, mitochondrial and nuclear diversity in plant populations. Mol. Ecol. 14:689–701. , , , , , and .
- 1985. Monoterpene and morphological variation and hybridization of Pinus contorta and P. banksiana in Alberta. Can. J. Bot. 63:201–210. , and .
- 1993. Introgression and its consequences in plants. Pp. 70–109 in R. G. Harrison , ed. Hybrid zones and the evolutionary process. Oxford University Press, New York. , and .
- 1975. Volatile leaf oil analysis in chemosystematic studies of North American conifers. Biochem. Syst. Ecol. 2:131–167.
- 1979. Chemosystematic studies in the genus Pinus III. The leaf oil terpene composition of lodgepole pine from the Yukon Territory. Can. J. Bot. 57:1367–1370. , and .
- 1990. Pinus banksiana Lamb. Jack pine. Pp. 280–293 in R. M. Burns , and B. H. Honkala , eds. Silvics of North America I. Conifers. U.S. Department of Agriculture, Forest Service, Washington, DC. , and .
- 1982. Genetics of jack pine. U.S. Department of Agriculture, Forest Service, Washington, DC. Research Paper WO-38. 64 p. , and .
- 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406–425. , and .
- 1999. Extensive mitochondrial introgression from Pinus pumila to P. parviflora var. pentaphylla (Pinaceae). J. Plant. Res. 112:97–105. , , , , and .
- 2010. Of glaciers and refugia: a decade of study sheds new light on the phylogeography of northwestern North America. Mol. Ecol. 19:4589–4621. , , , and .
- 1983. Monoterpenes of lodgepole pine xylem resin: a regional study in western United States. For. Sci. 29: 333–340.
- 2006. Comparative phylogeography of unglaciated eastern North America. Mol. Ecol. 15:4261–4293. , , , , and .
- 2003. Post-Hypsithermal plant disjunctions in western Alberta, Canada. J. Biogeogr. 30:419–430. , and .
- 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol. Biol. 17:1105–1109. , , , and .
- 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596–1599. , , , and .
- 1998. Differentiation of mitochondrial DNA polymophisms in populations of five Japanese Abies species. Evolution 52:1031–1042. , and .
- 1987. Chloroplast DNA polymorphisms in lodgepole and jack pines and their hybrids. Proc. Natl Acad. Sci. USA 84:2097–2100. , , , , , and .
- 1991. Spatial patterns of chloroplast DNA and cone morphology variation within populations of a Pinus banksiana-Pinus contorta sympatric region. Am. Nat. 138:156–170. , , , and .
- 1999. Phylogenetic relationships of Eurasian pines (Pinus, Pinaceae) based on chloroplast rbcL, matK, rpL20-rpS18 spacer, and trnV intron sequences. Am. J. Bot. 86:1742–1753. , , , , and .
- 2011. Range-wide chloroplast and mitochondrial DNA imprints reveal multiple lineages and complex biogeographic history for Douglas-fir. Tree Genet. Genomes 7:1025–1040. , , , , , , et al.
- 1996. Genetic data analysis II. Sinauer Associates, Sunderland, MA. 445 p. .
- 1987. A quantitative measure of introgression between lodgepole and jack pines. Can. J. Bot. 65:1876–1885. , and .
- 2010. Adaptive introgression of abiotic tolerance traits in the sunflower Helianthus annuus . New Phytol. 187:230–239. , , and .
- 2004. Late-Quaternary vegetation dynamics in North America: scaling from taxa to biomes. Ecol. Monogr. 74:309–334. , , , , and .
- 2009. Rapid responses of the prairie-forest ecotone to early Holocene aridity in mid-continental North America. Global Planet. Change 66:195–207. , , and .
- 2002. Population structure of a lodgepole pine (Pinus contorta) and jack pine (P. banksiana) complex as revealed by random amplified polymorphic DNA. Genome 45:530–540. , , and .
- 1969. Turpentine composition of Pinus contorta × Pinus banksiana hybrids and hybrid derivatives. Can. J. Bot. 47:1443–1453. , , and .