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References

  • Alfoldi, J., F. Di Palma, M. Grabherr , C., Williams, L. Kong, and E. Mauceli. 2011. The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature 477:587591.
  • Austin, J. D., S. C. Lougheed, and P.T. Boag. 2004. Discordant temporal and geographic patterns in maternal lineages of eastern north American frogs, Rana catesbeiana (Ranidae) and Pseudacris crucifer (Hylidae). Mol. Phylogenet. Evol. 32:799816.
  • Avise, J. C. 2000. Phylogeography: the history and formation of species. Harvard Univ. Press, Cambridge, MA.
  • Brant, S. V., and G. Orti. 2003. Phylogeography of the Northern short-tailed shrew, Blarina brevicauda (Insectivora: Soricidae): past fragmentation and postglacial recolonization. Mol. Ecol. 12:14351449.
  • Buth, D. G., G. C. Gorman, and C. S. Lieb. 1980. Genetic divergence between Anolis carolinensis and its Cuban progenitor, Anolis porcatus. J. Herpetol. 14:279284.
  • Christman, S. P. 1980. Preliminary observations on the gray-throated form of Anolis carolinensis (Reptilia: Iguanidae). Fla. Field Nat. 8:1116.
  • Church, S. A., J. M. Kraus, J. C. Mitchell, D. R. Church, and D. R. Taylor. 2003. Evidence for multiple pleistocene refugia in the postglacial expansion of the eastern tiger salamander, Ambystoma tigrinum tigrinum. Evolution 57:372383.
  • D'angiolella, A. B., T. Gamble, T. C. S. Avila-Pires, G. R. Colu, B. P. Noonan, and L. J. Vitt. 2011. Anolis chrysolepis Duméril and Bibron, 1837 (Squamata: Iguanidae), revisited: molecular phylogeny and taxonomy of the Anolis chrysolepis species group. Bull. Mus. Comp. Zool. 160:3563.
  • Davis, M. B. 1981. Quaternary history and the stability of forest communities. Pp. 132177 in D. C. West, H. H. Shugart, and D. B. Botkin, eds. Forest succession. Springer, New York.
  • Delcourt, P. A., and H. R. Delcourt. 1981. Vegetation maps for eastern North America: 40 000 yr. bp to the present. Pp. 123165 in R. C. Romans, ed. Geobotany II. Plenum, New York.
  • Drummond, A. J., and A. Rambaut. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214.
  • Edwards, S., and S. Bensch. 2009. Looking forwards or looking backwards in avian phylogeography? A comment on Zink and Barrowclough 2008. Mol. Ecol. 18:29302933.
  • Ellsworth, D. L., R. L. Honeycutt, N. J. Silvy, J. W. Bickham, and W. D. Klimstra. 1994. Historical biogeography and contemporary patterns of mitochondrial DNA variation in white-tailed deer from the southeastern United States. Evolution 48:122136.
  • Fujita, M. K., S. V. Edwards, and C. P. Ponting. 2011. The Anolis lizard genome: an amniote genome without isochores. Genome Biol. Evol. 3:974984.
  • Gibbs, H. L., S. J. Corey, G. Blouin-Demers, K. A. Prior, and P. J. Weatherhead. 2006. Hybridization between mtDNA-defined phylogeographic lineages of black ratsnakes (Pantherophis sp.). Mol. Ecol. 15:37553767.
  • Glor, R. E., L. J. Vitt, and A. Larson. 2001. A molecular phylogenetic analysis of diversification in Amazonian Anolis lizards. Mol. Ecol. 10:26612668.
  • Glor, R. E., J. J. Kolbe, R. Powell, A. Larson, and J. B. Losos. 2003. Phylogenetic analysis of ecological and morphological diversification in Hispaniolan trunk-ground anoles (Anolis cybotes group). Evolution 57:23832397.
  • Glor, R. E., M. E. Gifford, A. Larson, J. B. Losos, L. R. Schettino, and A. R. C. Lara. 2004. Partial island submergence and speciation in an adaptive radiation: a multilocus analysis of the Cuban green anoles. Proc. R. Soc. B Biol. Sci 271:22572265.
  • Glor, R. E., J. B. Losos, and A. Larson. 2005. Out of Cuba: overwater dispersal and speciation among lizards in the Anolis carolinensis subgroup. Mol. Ecol. 14:24192432.
  • Hayes, J. P., and R. G. Harrison. 1992. Variation in mitochondrial-DNA and the biogeographic history of woodrats (Neotoma) of the eastern United States. Syst. Biol. 41:331344.
  • Hoffman, E. A., and M. S. Blouin. 2004. Evolutionary history of the northern leopard frog: reconstruction of phylogeny, phylogeography, and historical changes in population demography from mitochondrial DNA. Evolution 58:145159.
  • Holman, J. A. 1995. Pleistocene amphibians and reptiles in North America. Oxford Univ. Press, North America. 243 p.
  • Jackman, T. R., D. J. Irschick, K. de Quieroz, J. B. Losos, and A. Larson. 2002. Molecular phylogenetic perspective on evolution of lizards of the Anolis grahami series. J. Exp. Zool. 294:116.
  • Jackson, S. T., R. S. Webb, K. H. Anderson, J. T. Overpeck, T. Webb, and J. W. Williams. 2000. Vegetation and environment in eastern North America during the last glacial maximum. Quat Sci Rev 19:489508.
  • Jones, M. T., S. R. Voss, M. B. Ptacek, D. W. Weisrock, and D. W. Tonkyn. 2006. River drainages and phylogeography: an evolutionary significant lineage of shovel-nosed salamander (Desmognathus marmoratus) in the southern Appalachians. Mol. Phylogenet. Evol. 38:280287.
  • Knouft, J. H., J. B. Losos, R. E. Glor, and J. J. Kolbe. 2006. Phylogenetic analysis of the evolution of the niche in lizards of the Anolis sagrei group. Ecology 87:S29S38.
  • Kolbe, J. J., R. E. Glor, L. R. Schettino, A. C. Lara, A. Larson, and J. B. Losos. 2004. Genetic variation increases during biological invasion by a Cuban lizard. Nature 431:177181.
  • Kolbe, J. J., R. E. Glor, L. R. Schettino, A. C. Lara, A. Larson, and J. B. Losos. 2007. Multiple sources, admixture, and genetic variation in introduced Anolis lizard populations. Conserv. Biol. 21:16121625.
  • Lawson, R. 1987. Molecular studies of Thamnophiine snakes.1. The phylogeny of the genus Nerodia. J. Herpetol. 21:140157.
  • Librado, P., and J. Rozas. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:14511452.
  • Liu, F. G. R., P. E. Moler, and M. M. Miyamoto. 2006. Phylogeography of the salamander genus Pseudobranchus in the southeastern United States. Mol. Phylogenet. Evol. 39:149159.
  • Losos, J. B. 2009. Lizards in an evolutionary tree: ecology and adaptive radiation of anoles. University of California Press, Berkeley, CA. 528 p.
  • Lovern, M. B., M. M. Holmes, and J. Wade. 2004. The green anole (Anolis carolinensis): a reptilian model for laboratory studies of reproductive morphology and behavior. ILAR J. 45:5464.
  • Lynch, M., and T. J. Crease. 1990. The analysis of population survey data on DNA sequence variation. Mol. Biol. Evol. 7:377394.
  • Macey, J. R., A. Larson, N. B. Ananjeva, and T. J. Papenfuss. 1997. Evolutionary shifts in three major structural features of the mitochondrial genome among iguanian lizards. J. Mol. Evol. 44:660674.
  • Macey, J. R., J. A. Schulte, N. B. Ananjeva, A. Larson, N. Rastegar-Pouyani, and S. M. Shammakov. 1998. Phylogenetic relationships among agamid lizards of the Laudakia caucasia species group: testing hypotheses of biogeographic fragmentation and an area cladogram for the Iranian Plateau. Mol. Phylogenet. Evol. 10:118131.
  • Maddison, D. R., and W. P. Maddison. 2000. MacClade version 4: analysis of phylogeny and character evolution. Sinauer Associates, Sunderland, MA.
  • Malhotra, A., and R. S. Thorpe. 1994. Parallels between island lizards suggests selection on mitochondrial-DNA and morphology. Proc. R. Soc. Lond. B Biol. Sci. 257:3742.
  • Malhotra, A., and R. S. Thorpe. 2000. The dynamics of natural selection and vicariance in the Dominican anole: patterns of within-island molecular and morphological divergence. Evolution 54:245258.
  • Miller, M. A., W. Pfeiffer, and T. Schwarts. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetics trees. Proceedings of the Gateway Computing Environments Workshop (GCE), 14 November 2010, New Orleans, LA pp. 18.
  • Moriarty, E. C., and D. C. Cannatella. 2004. Phylogenetic relationships of the North American chorus frogs (Pseudacris: Hylidae). Mol. Phylogenet. Evol. 30:409420.
  • Nei, M. 1982. Evolution of human races at the gene level. Pp. 167181 in B. Bonne-Tamir, T. Cohen, and R. M. Goodman, eds. Human genetics, part A: the unfolding genome. Alan R. Liss, New York.
  • Nei, M. 1987. Molecular evolutionary genetics. Columbia Univ. Press, New York.
  • Ogden, R., and R. S. Thorpe. 2002. Molecular evidence for ecological speciation in tropical habitats. Proc. Natl. Acad. Sci. USA 99:1361213615.
  • Patterson, N., A. L. Price, and D. Reich. 2006. Population structure and eigenanalysis. PLoS Genet. 2:20742093.
  • Posada, D. 2008. jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 25:12531256.
  • Price, A. L., N. J. Patterson, R. M. Plenge, M. E. Weinblatt, N. A. Shadick, and D. Reich. 2006. Principal components analysis corrects for stratification in genome-wide association studies. Nat. Genet. 38:904909.
  • R Core Development Team. 2010. R: a language and environment for statistical computing. R Foundation for Statistical Computing, version 2.13.1, Vienna, Austria.
  • Riggs, S. R. 1984. Paleoceanographic model of neogene phosphorite deposition, United States atlantic continental margin. Science 223:123131.
  • Rodriguez-Robles, J. A., T. Jezkova, and M. A. Garcia. 2007. Evolutionary relationships and historical biogeography of Anolis desechensis and Anolis monensis, two lizards endemic to small islands in the eastern Caribbean Sea. J. Biogeogr. 34:15461558.
  • Sambrook, J., and D. W. Russell. 2001. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Plainview, NY.
  • Schneider, C. J. 1996. Distinguishing between primary and secondary intergradation among morphologically differentiated populations of Anolis marmoratus. Mol. Ecol. 5:239249.
  • Scott, T. M., and S. B. Upchurch. 1982. Miocene of the southeastern United States. Florida Department of Natural Resources Bureau of Geology Special Publication 25, Tallahassee, FL. 319 pp.
  • Soltis, D. E., A. B. Morris, J. S. McLachlan, P. S. Manos, and P. S. Soltis. 2006. Comparative phylogeography of unglaciated eastern North America. Mol. Ecol. 15:42614293.
  • Stamatakis, A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:26882690.
  • Stamatakis, A., P. Hoover, and J. Rougemont. 2008. A fast bootstrapping algorithm for the RAxML web-servers. Syst. Biol. 57:758771.
  • Swenson, N. G., and D. J. Howard. 2005. Clustering of contact zones, hybrid zones, and phylogeographic breaks in North America. Am. Nat. 166:581591.
  • Tajima, F. 1983. Evolutionary relationship of DNA sequences in finite populations. Genetics 105:437460.
  • Tajima, F. 1989. The effect of change in population size on DNA polymorphisms. Genetics 123:597601.
  • Thorpe, R. S. 2002. Analysis of color spectra in comparative evolutionary studies: molecular phylogeny and habitat adaptation in the St. Vincent anole (Anolis trinitatis). Syst. Biol. 51:554569.
  • Thorpe, R. S., and A. G. Stenson. 2003. Phylogeny, paraphyly and ecological adaptation of the colour and pattern in the Anolis roquet complex on Martinique. Mol. Ecol. 12:117132.
  • Thorpe, R. S., D. L. Leadbeater, and C. E. Pook. 2005. Molecular clocks and geological dates: cytochrome b of Anolis extremus substantially contradicts dating of Barbados emergence. Mol. Ecol. 14:20872096.
  • Wade, J. K., A. C. Echternacht, and G. F. McCracken. 1983. Genetic variation and similarity in Anolis carolinensis (Sauria, iguanidae). Copeia 1983:523529.
  • Webster, T. P., R. K. Selander, and S. Y. Yang. 1972. Genetic variability and similarity in Anolis lizards of Bimini. Evolution 26:523535.
  • Williams, E. E. 1969. Ecology of colonization as seen in zoogeography of Anoline lizards on small islands. Q. Rev. Biol. 44:345389.
  • Williams, E. E. 1989. A critique of Guyer and Savage (1986): Cladistic relationships among anoles (Sauria: Iguanidae). Pp. 433478 in C. A. Woods, ed. Biogeography of the West Indies: past, present, and future. Sand Hills Crane Press, Gainesville, FL.
  • Wilson, M. A., and A. C. Echternacht. 1987. Geographic variation in the critical thermal minimum of the green anole, Anolis carolinensis (Sauria, Iguanidae), along a latitudinal gradient. Comp. Biochem. Physiol. A Physiol. 87:757760.
  • Wilson, M. A., and A. C. Echternacht. 1990. A comparison of heat and cold tolerance of 2 morphs of Anolis carolinensis (Iguanidae) from southern Florida. J. Herpetol. 24:330333.
  • Zamudio, K. R., and W. K. Savage. 2003. Historical isolation, range expansion, and secondary contact of two highly divergent mitochondrial lineages in spotted salamanders (Ambystoma maculatum). Evolution 57:16311652.