Invasion history and demographic pattern of Cryphonectria hypovirus 1 across European populations of the chestnut blight fungus
Article first published online: 22 NOV 2012
© 2012 The Authors. Ecology and Evolution published by Blackwell Publishing Ltd.
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Ecology and Evolution
Volume 2, Issue 12, pages 3227–3241, December 2012
How to Cite
Ecology and Evolution 2012; 2(12): 3227–3241
- Issue published online: 13 DEC 2012
- Article first published online: 22 NOV 2012
- Manuscript Accepted: 13 OCT 2012
- Manuscript Revised: 9 OCT 2012
- Manuscript Received: 20 AUG 2012
- Swiss National Science Foundation
- Competence Center Environment and Sustainability of the ETH Domain. Grant Number: IZ73Z0-127922
|ece3429-sup-0001-FigureS1.eps||image/eps||244K||Figure S1. Maximum-likelihood tree of phylogenetic relationships of Cryphonectria hypovirus 1 (CHV-1); deep phylogeny including samples from the European CHV-1 subtypes I, F1, F2, and D as well as samples from China and Japan. Branch lengths are drawn to scale, with the scale bar indicating the number of nucleotide substitutions per site. Bootstrap support values >80% are indicated on branches.|
|ece3429-sup-0002-FigureS2.tif||image/tif||308K||Figure S2. Effective population size (Ne*τ) change of the eight European Cryphonectria hypovirus 1 subtype I populations analyzed in this study represented as a Bayesian skyline plot through time. The gray area represents 95% highest posterior density (HPD) intervals. Dotted lines are estimates of the time to the most recent common ancestor (TMRCA and 95% HPD). Arrows indicate periods of growth (G) and stasis (S), respectively.|
|ece3429-sup-0003-FigureS3.eps||image/eps||249K||Figure S3. Genetic distance (linearized FST) is plotted against the logarithm of geographic distances (in km). No isolation by distance was inferred from matrix correlation between genetic distance (linearized FST) and log geographic distance (km). Line is the reduced major axis (RMA) regression. The correlation between genetic distance and geographic distance was not significant (Z = 99.6662, r = 0.2378, P = 0.94) based on 1000 randomizations using Mantel test.|
|ece3429-sup-0004-TableS1.doc||Word document||366K||Table S1. Vegetative compatibility (vc) types observed in the eight populations of Cryphonectria parasitica.|
|ece3429-sup-0005-TableS2.doc||Word document||366K||Table S2. Pairwise values for linearized FST (above diagonal) and geographic distance (below diagonal) used in the Mantel test for significance of isolation-by-distance (IBD) between populations of Cryphonectria hypovirus 1 subtype I.|
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