Duplication and population dynamics shape historic patterns of selection and genetic variation at the major histocompatibility complex in rodents
Article first published online: 22 APR 2013
© 2013 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.
This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
Ecology and Evolution
Volume 3, Issue 6, pages 1552–1568, June 2013
How to Cite
Ecology and Evolution 2013; 3(6): 1552–1568
- Issue published online: 12 JUN 2013
- Article first published online: 22 APR 2013
- Manuscript Accepted: 15 MAR 2013
- Manuscript Received: 8 MAR 2013
- Odum School of Ecology
- National Geographic Society
- Animal Behavior Society
- Association for Women in Science
- Philosophical Society
|ece3567-sup-0001-DataS1.docx||Word document||47K||Data S1. Genetic methods and statistical analyses.|
|ece3567-sup-0001-TableS1-S5.docx||Word document||78K|| |
Table S1. The comparative dataset of 16 rodent species used in the analysis.
Table S2. Results from codon-based Z-tests for (i) departures from neutrality (dN/dS ≠ 1) at the antigen binding sites (ABS) based on Brown et al. (1993) and Bondinas et al. (2007); (ii) negative selection (dS–dN > 1) at non-ABS across 16 rodent species and Tupaia.
Table S3. The subset of highly supported phylogenetic generalized least squares regression (PGLS) models (≥10% AICc weights of the top model) explaining the following dependent variables: log number of alleles, nucleotide diversity (π), dN/dS at ABS, and dN–dS at nonABS.
Table S4. Phylogenetic signal in rodent traits measured by Blomberg's K and Pagel's λ.
Table S5. Model-averaged estimates of the different parameters in the subset of models with high confidence (≥10% AICc weights of the top model), as well as the unconditional standard error, 95% confidence intervals, and importance.
Please note: Wiley Blackwell is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.