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References

  • Audzijonyte, A., and R. C. Vrijenhoek. 2009. Three nuclear genes for phylogenetic, SNP and population genetic studies of molluscs and other invertebrates. Mol. Ecol. Resour. 10:200204.
  • Baco, A. R., and C. R. Smith. 2003. High species richness in deep-sea chemoautotrophic whale skeleton communities. Mar. Ecol. Prog. Ser. 260:109114.
  • Baco-Taylor, A. R. 2002. Food-web structure, succession, and phylogenetics on deep-sea whale skeletons. p. 275 in Oceanography. The University of Hawaii, Manoa, HI. [Ph.D. dissertation].
  • Bergquist, D. C., C. Fleckenstein, E. B. Szalai, J. Knisel, and C. R. Fisher. 2004. Environment drives physiological variability in the cold seep mussel Bathymodiolus childressi. Limnol. Oceanogr. 49:706715.
  • Bettencourt, R., M. Pinheiro, C. Egas, P. Gomes, M. Afonso, T. Shank, et al. 2010. High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus. BMC Genomics 11:559.
  • Cavanaugh, C. M., C. O. Wirsen, and H. W. Jannasch. 1992. Evidence for methylotrophic symbionts in a hydrothermal vent mussel (Bivalvia: Mytilidae) from the Mid-Atlantic Ridge. Appl. Environ. Microbiol. 58:37993803.
  • Chapelle, G., and L. S. Peck. 1999. Polar gigantism dictated by oxygen availability. Nature 399:114115.
  • Childress, J. J., C. R. Fisher, J. M. Brooks, M. C. Kennicutt, R. Bidigare, and A. E. Anderson. 1986. A methanotrophic marine molluscan (Bivalvia, Mytilidae) symbiosis: mussels fueled by gas. Science 233:13061308.
  • von Cosel, R. 2002. A new species of bathymodioline mussel (Mollusca, Bivalvia, Mytilidae) from Mauritania (West Africa), with comments on the genus Bathymodiolus Kenk & Wilson, 1985. Zoosystema 24:259272.
  • von Cosel, R., and R. Janssen. 2008. Bathymodioline mussels of the Bathymodiolus (s. l.) childressi clade from methane seeps near Edison Seamount, New Ireland, Papua New Guinea: (Bivalvia: Mytilidae). Arch. Molluskenkd. 137:195224.
  • von Cosel, R., and B. A. Marshall. 2010. A new genus and species of large mussel (Mollusca: Bivalvia: Mytilidae) from the Kermadec Ridge. Nautilus 117:3146.
  • von Cosel, R., and K. Olu. 1998. Gigantism in Mytilidae. A new Bathymodiolus from cold seep areas on the Barbados accretionary prism. C. R. Acad. Sci. Ser. III Sci. Vie 321:655663.
  • Costello, M. J., M. Coll, R. Danovaro, P. Halpin, H. Ojaveer, and P. Miloslavich. 2010. A census of marine biodiversity knowledge, resources, and future challenges. PLoS One 5:e12110.
  • Craddock, C., W. R. Hoeh, R. G. Gustafson, R. A. Lutz, J. Hashimoto, and R. J. Vrijenhoek. 1995. Evolutionary relationships among deep-sea mytilids (Bivalvia: Mytilidae) from hydrothermal vents and cold-water methane/sulfide seeps. Mar. Biol. 121:477485.
  • Deming, J. W., A. L. Reysenbach, S. A. Macko, and C. R. Smith. 1997. Evidence for the microbial basis of a chemoautotrophic invertebrate community at a whale fall on the deep seafloor: bone-colonizing bacteria and invertebrate endosymbionts. Microsc. Res. Tech. 37:162170.
  • Distel, D. L. 2000. Phylogenetic relationships among mytilidae (Bivalvia): 18S rRNA data suggest convergence in mytilid body plans. Mol. Phylogenet. Evol. 15:2533.
  • Distel, D. L., D. J. Lane, G. J. Olsen, S. J. Giovannoni, B. Pace, N. R. Pace, et al. 1988. Sulfur-oxidizing bacterial endosymbionts: analysis of phylogeny and specificity by 16S rRNA sequences. J. Bacteriol. 170:25062510.
  • Distel, D. L., A. R. Baco, E. Chuang, W. Morrill, C. Cavanaugh, and C. R. Smith. 2000. Do mussels take wooden steps to deep-sea vents? Nature 403:725726.
  • Dixon, D. R., A. M. Pruski, and L. R. J. Dixon. 2004. The effects of hydrostatic pressure change on DNA integrity in the hydrothermal-vent mussel Bathymodiolus azoricus: implications for future deep-sea mutagenicity studies. Mutat. Res. 552:235246.
  • Dubilier, N., R. Windoffer, and O. Giere. 1998. Ultrastructure and stable carbon isotope composition of the hydrothermal vent mussels Bathymodiolus brevior and B. sp. affinis brevior from the North Fiji Basin, western Pacific. Mar. Ecol. Prog. Ser. 165:187193.
  • Duperron, S., T. Nadalig, J.-C. Caprais, M. Sibuet, A. Fiala-Medioni, R. Amann, et al. 2005. Dual symbiosis in a Bathymodiolus sp. mussel from a methane seep on the Gabon continental margin (Southeast Atlantic): 16S rRNA phylogeny and distribution of the symbionts in gills. Appl. Environ. Microbiol. 71:16941700.
  • Duperron, S., M. Sibuet, B. J. MacGregor, M. M. M. Kuypers, C. R. Fisher, and N. Dubilier. 2007. Diversity, relative abundance and metabolic potential of bacterial endosymbionts in three Bathymodiolus mussel species from cold seeps in the Gulf of Mexico. Environ. Microbiol. 9:14231438.
  • Duperron, S., S. Halary, J. Lorion, M. Sibuet, and F. Gaill. 2008a. Unexpected co-occurrence of six bacterial symbionts in the gills of the cold seep mussel Idas sp. (Bivalvia: Mytilidae). Environ. Microbiol. 10:433445.
  • Duperron, S., M. C. Z. Laurent, F. Gaill, and O. Gros. 2008b. Sulphur-oxidizing extracellular bacteria in the gills of Mytilidae associated with wood falls. FEMS Microbiol. Ecol. 63:338349.
  • Duperron, S., J. Lorion, S. Samadi, O. Gros, and F. Gaill. 2009. Symbioses between deep-sea mussels (Mytilidae: Bathymodiolinae) and chemosynthetic bacteria: diversity, function and evolution. C. R. Biol. 332:298310.
  • Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783791.
  • Fiala-Medioni, A., Z. McKiness, P. Dando, J. Boulegue, A. Mariotti, A. Alayse-Danet, et al. 2002. Ultrastructural, biochemical, and immunological characterization of two populations of the mytilid mussel Bathymodiolus azoricus from the Mid-Atlantic Ridge: evidence for a dual symbiosis. Mar. Biol. 141:10351043.
  • Folmer, O., M. Black, W. Hoeh, R. Lutz, and R. Vrijenhoek. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotech. 3:294299.
  • Fontanez, K. M., and C. M. Cavanaugh. 2013. Phylogenetic relationships of hydrothermal vent mussels (Bathymodiolinae) and their symbionts. Mar. Ecol. Prog. Ser. 474:147154.
  • Fujita, Y., H. Matsumoto, Y. Fujiwara, J. Hashimoto, S. V. Galkin, R. Ueshima, et al. 2009. Phylogenetic relationships of deep-sea Bathymodiolus mussels to their mytilid relatives from sunken whale carcasses and wood. Venus 67:123134.
  • Fujiwara, Y., K. Takai, K. Uematsu, S. Tsuchida, J. C. Hunt, and J. Hashimoto. 2000. Phylogenetic characterization of endosymbionts in three hydrothermal vent mussels: influence on host distributions. Mar. Ecol. Prog. Ser. 208:147155.
  • Fujiwara, Y., M. Kawato, C. Noda, G. Kinoshita, T. Yamanaka, Y. Fujita, et al. 2010. Extracellular and mixotrophic symbiosis in the whale-fall mussel Adipicola pacifica: a trend in evolution from extra- to intracellular symbiosis. PLoS One 5:e11808.
  • Génio, L., S. Kiel, M. R. Cunha, J. Grahame, and C. T. S. Little. 2012. Shell microstructures of mussels (Bivalvia: Mytilidae: Bathymodiolinae) from deep-sea chemosynthetic sites: do they have a phylogenetic significance? Deep-Sea Res. I 64:86103.
  • Giribet, G., S. Carranza, J. Baguna, M. Riutort, and C. Ribera. 1996. First molecular evidence for the existence of a Tardigrada+ Arthropoda clade. Mol. Biol. Evol. 13:7684.
  • Gould, S. J., and R. C. Lewontin. 1979. The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme. Proc. R. Soc. Lond. B Biol. Sci. 205:581598.
  • Gustafson, R. G., R. D. Turner, R. A. Lutz, and R. C. Vrijenhoek. 1998. A new genus and five new species of mussels (Bivalvia, Mytilidae) from deep-sea sulfide/hydrocarbon seeps in the Gulf of Mexico. Malacologia 40:63112.
  • Hardivillier, Y., V. Leignel, F. Denis, G. Uguen, R. Cosson, and M. Laulier. 2004. Do organisms living around hydrothermal vent sites contain specific metallothioneins? The case of the genus Bathymodiolus (Bivalvia, Mytilidae). Comp. Biochem. Physiol. C Toxicol. Pharmcol. 139:111118.
  • Hashimoto, J., and T. Yamane. 2005. A new species of Gigantidas (Bivalvia: Mytilidae) from a vent site on the Kaikata Seamount southwest of the Ogasawara (Bonin) Islands, southern Japan. Venus 64:110.
  • Hassouna, N., B. Mithot, and J. P. Bachellerie. 1984. The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes. Nucleic Acids Res. 12:35633583.
  • Heath, T. A., D. J. Zwickl, J. Kim, and D. M. Hillis. 2008. Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees. Syst. Biol. 57:160166.
  • Iwasaki, H., A. Kyuno, M. Shintaku, Y. Fujita, Y. Fujiwara, K. Fujikura, et al. 2006. Evolutionary relationships of deep-sea mussels inferred by mitochondrial DNA sequences. Mar. Biol. 149:11111122.
  • Jannasch, H. W. 1985. The chemosynthetic support of life and the microbial diversity at deep-sea hydrothermal vents. Proc. R. Soc. Lond. B Biol. Sci. 225:277297.
  • Jobb, G., A. von Haeseler, and K. Strimmer. 2004. TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol. Biol. 4:18.
  • Jones, W. J., and R. C. Vrijenhoek. 2006. Evolutionary relationships within the “Bathymodiolus” childressi group. Cah. Biol. Mar. 47:403407.
  • Jones, W. J., Y. J. Won, P. A. Y. Maas, P. J. Smith, R. A. Lutz, and R. C. Vrijenhoek. 2006. Evolution of habitat use by deep-sea mussels. Mar. Biol. 148:841851.
  • Kadar, E., and J. Powell. 2006. Post-capture investigations of hydrothermal vent macro-invertebrates to study adaptations to extreme environments. Rev. Environ. Sci. Biotechnol. 5:193201.
  • Kádár, E., R. Bettencourt, V. Costa, R. S. Santos, A. Lobo-da-Cunha, and P. Dando. 2005. Experimentally induced endosymbiont loss and re-acquirement in the hydrothermal vent bivalve Bathymodiolus azoricus. J. Exp. Mar. Biol. Ecol. 318:99110.
  • Klok, C. J. 2009. O2 levels may not determine gigantism. J. Exp. Biol. 212:iv.
  • Kyuno, A., M. Shintaku, Y. Fujita, H. Matsumoto, M. Utsumi, H. Watanabe, et al. 2009. Dispersal and differentiation of deep-sea mussels of the genus Bathymodiolus (Mytilidae, Bathymodiolinae). J. Mar. Biol. 2009:115.
  • Lallier, F. H. 2006. Thioautotrophic symbiosis: towards a new step in eukaryote evolution. Cah. Biol. Mar. 47:391396.
  • Lorion, J., and S. Samadi. 2010. Species richness, sampling bias and phylogenetics in deep-sea mussels. Cah. Biol. Mar. 51:435539.
  • Lorion, J., S. Duperron, O. Gros, C. Cruaud, and S. Samadi. 2009. Several deep-sea mussels and their associated symbionts are able to live both on wood and on whale falls. Proc. Biol. Sci. 276:177185.
  • Lorion, J., B. Buge, C. Cruaud, and S. Samadi. 2010. New insights into diversity and evolution of deep-sea Mytilidae (Mollusca: Bivalvia). Mol. Phylogenet. Evol. 57:7183.
  • Lorion, J., S. Halary, and J. do Nascimento, S. Samadi, A. Couloux, and S. Duperron. 2012. Evolutionary history of Idas sp. Med, (Bivalvia: Mytilidae), a cold seep mussel bearing multiple symbionts. Cah. Biol. Mar. 53:7787.
  • Maddison, W. P., and D. R. Maddison. 2011. Mesquite: a modular system for evolutionary analysis. Version 2.75. Available at http://mesquiteproject.org website (accessed October 2012).
  • McKiness, Z. P., E. R. McMullin, C. R. Fisher, and C. M. Cavanaugh. 2005. A new bathymodioline mussel symbiosis at the Juan de Fuca hydrothermal vents. Mar. Biol. 148:109116.
  • Mestre, N. C., S. Thatje, and P. A. Tyler. 2009. The ocean is not deep enough: pressure tolerances during early ontogeny of the blue mussel Mytilus edulis. Proc. Biol. Sci. 276:717726.
  • Miyazaki, J. I., M. Shintaku, A. Kyuno, Y. Fujiwara, J. Hashimoto, and H. Iwasaki. 2004. Phylogenetic relationships of deep-sea mussels of the genus Bathymodiolus (Bivalvia: Mytilidae). Mar. Biol. 144:527535.
  • Miyazaki, J. I., L. de Oliveira Martins, Y. Fujita, H. Matsumoto, and Y. Fujiwara. 2010. Evolutionary process of deep-sea Bathymodiolus mussels. PLoS One 5:e10363.
  • Nix, E. R., C. R. Fisher, J. Vodenichar, and K. M. Scott. 1995. Physiological ecology of a mussel with methanotrophic endosymbionts at three hydrocarbon seep sites in the Gulf of Mexico. Mar. Biol. 122:605617.
  • Nylander, J. A. A., J. C. Wilgenbusch, D. L. Warren, and D. L. Swofford. 2008. AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24:581583.
  • Okusu, A., E. Schwabe, D. J. Eernisse, and G. Giribet. 2003. Towards a phylogeny of chitons (Mollusca, Polyplacophora) based on combined analysis of five molecular loci. Org. Divers. Evol. 3:281302.
  • Olu-Le Roy, K., M. Sibuet, A. Fiala-Médioni, S. Gofas, C. Salas, A. Mariotti, et al. 2004. Cold seep communities in the deep eastern Mediterranean Sea: composition, symbiosis and spatial distribution on mud volcanoes. Deep-Sea Res. I 51:19151936.
  • Olu-Le Roy, K., R. von Cosel, S. Hourdez, S. L. Carney, and D. Jollivet. 2007. Amphi-Atlantic cold-seep Bathymodiolus species complexes across the equatorial belt. Deep-Sea Res. I 54:18901911.
  • Pante, E., L. Corbari, J. Thubaut, T. Y. Chan, R. Mana, M. C. Boisselier, et al. 2012. Exploration of the deep-sea fauna of Papua New Guinea. Oceanography 25:214225.
  • Posada, D., and K. A. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14:817818.
  • Pruski, A. M., and D. R. Dixon. 2007. Heat shock protein expression pattern (HSP70) in the hydrothermal vent mussel Bathymodiolus azoricus. Mar. Environ. Res. 64:209224.
  • Rambaud, A., and A. J. Drummond. 2007. Tracer, version 1.4. Available at http://beast.bio.ed.ac.uk/Tracer (accessed December 2012).
  • Ronquist, F., and J. P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:15721574.
  • Samadi, S., E. Quemere, J. Lorion, A. Tillier, R. von Cosel, P. Lopez, et al. 2007. Molecular phylogeny in mytilids supports the wooden steps to deep-sea vents hypothesis. C. R. Biol. 330:446456.
  • Samadi, S., L. Corbari, J. Lorion, S. Hourdez, T. Haga, J. Dupont, et al. 2010. Biodiversity of deep-sea organisms associated with sunken-wood or other organic remains sampled in the tropical Indo-Pacific. Cah. Biol. Mar. 51:459466.
  • Schultz, T. F., P. Y. Hsing, A. Eng, K. A. Zelnio, A. D. Thaler, J. Carlsson, et al. 2011. Characterization of 18 polymorphic microsatellite loci from Bathymodiolus manusensis (Bivalvia, Mytilidae) from deep-sea hydrothermal vents. Conserv. Genet. 3:2527.
  • Serafim, A., B. Lopes, R. Company, A. M. Ferreira, and M. J. Bebianno. 2008. Comparative petroleum hydrocarbons levels and biochemical responses in mussels from hydrothermal vents (Bathymodiolus azoricus) and coastal environments (Mytilus galloprovincialis). Mar. Pollut. Bull. 57:529537.
  • Sharma, P. C., A. Grover, and G. Kahl. 2007. Mining microsatellites in eukaryotic genomes. Trends Biotechnol. 25:490498.
  • Smith, P. J., S. M. McVeagh, Y. Won, and R. C. Vrijenhoek. 2004. Genetic heterogeneity among New Zealand species of hydrothermal vent mussels (Mytilidae: Bathymodiolus). Mar. Biol. 144:537545.
  • Southward, E. C. 2008. The morphology of bacterial symbioses in the gills of mussels of the genera Adipicola and Idas (Bivalvia: Mytilidae). J. Shellfish Res. 27:139146.
  • Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:15961599.
  • Thubaut, J. 2012. Evolutionary history and biology of the populations of mytilids associated with sunken organic substrates. Comparative approach among Bathymodiolinae from deep-sea reducing environments. [Ph.D. thesis], Muséum National d'Histoire Naturelle, Paris.
  • Van Buskirk, J. 2009. Getting in shape: adaptation and phylogenetic inertia in morphology of Australian anuran larvae. J. Evol. Biol. 22:13261337.
  • Van Dover, C. L., S. E. Humphris, D. Fornari, C. M. Cavanaugh, R. Collier, S. K. Goffredi, et al. 2001. Biogeography and ecological setting of Indian Ocean hydrothermal vents. Science 294:818.
  • Voight, J. R., and M. Segonzac. 2012. At the bottom of the deep blue sea: a new wood-boring bivalve (Mollusca, Pholadidae, Xylophaga) from the Cape Verde Abyssal Plain (subtropical Atlantic). Zoosystema 34:171180.
  • Vrijenhoek, R. C. 2009. Cryptic species, phenotypic plasticity, and complex life histories: assessing deep-sea faunal diversity with molecular markers. Deep-Sea Res. II 56:17131723.
  • Wolff, T. 1979. Macrofaunal utilization of plant remains in the deep sea. Sarsia 64:117136.
  • Won, Y., C. R. Young, R. A. Lutz, and R. C. Vrijenhoek. 2003. Dispersal barriers and isolation among deep-sea mussel populations (Mytilidae: Bathymodiolus) from eastern Pacific hydrothermal vents. Mol. Ecol. 12:169184.
  • Won, Y. J., W. J. Jones, and R. C. Vrijenhoek. 2008. Absence of cospeciation between deep-sea Mytilids and their thiotrophic endosymbionts. J. Shellfish Res. 27:129138.
  • Woods, H. A., A. L. Moran, C. P. Arango, L. Mullen, and C. Shields. 2009. Oxygen hypothesis of polar gigantism not supported by performance of Antarctic pycnogonids in hypoxia. Proc. Biol. Sci. 276:10691075.
  • Yamanaka, T., C. Mizota, Y. Maki, K. Fujikura, and H. Chiba. 2000. Sulfur isotope composition of soft tissues of deep-sea mussels, Bathymodiolus spp., in Japanese waters. Benthos Res. 55:6368.
  • Yamanaka, T., C. Mizota, Y. Fujiwara, H. Chiba, J. Hashimoto, T. Gamo, et al. 2003. Sulphur-isotopic composition of the deep-sea mussel Bathymodiolus marisindicus from currently active hydrothermal vents in the Indian Ocean. J. Mar. Biol. Assoc. U. K. 83:841848.