Functional similarity and molecular divergence of a novel reproductive transcriptome in two male-pregnant Syngnathus pipefish species
Article first published online: 20 SEP 2013
© 2013 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.
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Ecology and Evolution
Volume 3, Issue 12, pages 4092–4108, October 2013
How to Cite
Ecology and Evolution 2013; 3(12): 4092–4108
- Issue published online: 23 OCT 2013
- Article first published online: 20 SEP 2013
- Manuscript Accepted: 12 AUG 2013
- Manuscript Revised: 6 AUG 2013
- Manuscript Received: 2 JUL 2013
- National Science Foundation
- American Museum of Natural History Lerner-Gray
- Sigma Xi
- Michigan State University
|ece3763-sup-0001-FigureS1.pdf||application/PDF||70K||Figures S1 and S2 corresponding to S. scovelli and S. floridae, respectively, are MA-plots from DEG-seq differential expression analyses. M (y-axis values) = log2CPregnant – log2CNonpregnant, where Ci represents the number of uniquely mapped reads from library i. A (x-axis values) = (log2CPregnant + log2CNonpregnant)/2. Genes (contigs) for which the DEG-seq P-value < 0.05 are represented by red dots on the MA-plots.|
|ece3763-sup-0003-TableS1.csv||CSV document||672K||Table S1 contains 6 columns, which correspond to S. scovelli contig name, contig length, number of uniquely mapped reads from the pregnant library, number of uniquely mapped reads from the nonpregnant library, the normalized pregnant/nonpregnant fold change, and the DEG-seq “MARS” P-value for differential expression.|
|ece3763-sup-0004-TableS2.csv||CSV document||383K||Table S2 contains the same information, but for S. floridae.|
|ece3763-sup-0005-TableS3.csv||CSV document||23K||Table S3 contains this information, including top blastx hit descriptions, for the 150 orthologous pairs that belong to pregnancy-enriched, pregnancy-depressed, and evenly expressed categories.|
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