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  1. 1
    Victor Greiff, Pooja Bhat, Skylar C. Cook, Ulrike Menzel, Wenjing Kang, Sai T. Reddy, A bioinformatic framework for immune repertoire diversity profiling enables detection of immunological status, Genome Medicine, 2015, 7, 1

    CrossRef

  2. 2
    Zhoufang Li, Guangjie Liu, Yin Tong, Meng Zhang, Ying Xu, Li Qin, Zhanhui Wang, Xiaoping Chen, Jiankui He, Comprehensive analysis of the T-cell receptor beta chain gene in rhesus monkey by high throughput sequencing, Scientific Reports, 2015, 5, 10092

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  3. 3
    Claudia Brandariz-Fontes, Miguel Camacho-Sanchez, Carles Vilà, José Luis Vega-Pla, Ciro Rico, Jennifer A. Leonard, Effect of the enzyme and PCR conditions on the quality of high-throughput DNA sequencing results, Scientific Reports, 2015, 5, 8056

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  4. 4
    Daniel J. Laydon, Charles R. M. Bangham, Becca Asquith, Estimating T-cell repertoire diversity: limitations of classical estimators and a new approach, Philosophical Transactions of the Royal Society B: Biological Sciences, 2015, 370, 1675, 20140291

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  5. 5
    Yingxin Han, Xing Liu, Yuqi Wang, Xiaolei Wu, Yanfang Guan, Hongmei Li, Xinchun Chen, Boping Zhou, Qing Yuan, Ying Ou, Renhua Wu, Wanqiu Huang, Yun Wang, Ming Zhang, Yinxin Zhang, Dongxing Zhu, Hongmei Zhu, Ling Yang, Xin Yi, Chen Huang, Jian Huang, Identification of characteristic TRB V usage in HBV-associated HCC by using differential expression profiling analysis, OncoImmunology, 2015, 4, 8, e1021537

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  6. 6
    Yingxin Han, Hongmei Li, Yanfang Guan, Jian Huang, Immune repertoire: A potential biomarker and therapeutic for hepatocellular carcinoma, Cancer Letters, 2015,

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  7. 7
    David Martino, Katrina Allen, Meeting the challenges of measuring human immune regulation, Journal of Immunological Methods, 2015,

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  8. 8
    Dmitriy A Bolotin, Stanislav Poslavsky, Igor Mitrophanov, Mikhail Shugay, Ilgar Z Mamedov, Ekaterina V Putintseva, Dmitriy M Chudakov, MiXCR: software for comprehensive adaptive immunity profiling, Nature Methods, 2015, 12, 5, 380

    CrossRef

  9. 9
    O Pabst, H Hazanov, R Mehr, Old questions, new tools: does next-generation sequencing hold the key to unraveling intestinal B-cell responses?, Mucosal Immunology, 2015, 8, 1, 29

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  10. 10
    Preston Leung, Rowena Bull, Andrew Lloyd, Fabio Luciani, A Bioinformatics Pipeline for the Analyses of Viral Escape Dynamics and Host Immune Responses during an Infection, BioMed Research International, 2014, 2014, 1

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  11. 11
    Jorg J.A. Calis, Brad R. Rosenberg, Characterizing immune repertoires by high throughput sequencing: strategies and applications, Trends in Immunology, 2014, 35, 12, 581

    CrossRef

  12. 12
    I. V. Zvyagin, M. V. Pogorelyy, M. E. Ivanova, E. A. Komech, M. Shugay, D. A. Bolotin, A. A. Shelenkov, A. A. Kurnosov, D. B. Staroverov, D. M. Chudakov, Y. B. Lebedev, I. Z. Mamedov, Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing, Proceedings of the National Academy of Sciences, 2014, 111, 16, 5980

    CrossRef

  13. 13
    Federico Serana, Marco Chiarini, Alessandra Sottini, Diego Bertoli, Viviana Giustini, Marion Vaglio Tessitore, Luigi Caimi, Ruggero Capra, Luisa Imberti, Immunological biomarkers identifying natalizumab-treated multiple sclerosis patients at risk of progressive multifocal leukoencephalopathy, Journal of Neuroimmunology, 2014, 277, 1-2, 6

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  14. 14
    S.M. Hassan, R.H.A.M. Vossen, R. Chessa, J.T. den Dunnen, E. Bakker, P.C. Giordano, C.L. Harteveld, Molecular diagnostics of the HBB gene in an Omani cohort using bench-top DNA Ion Torrent PGM technology, Blood Cells, Molecules, and Diseases, 2014, 53, 3, 133

    CrossRef

  15. 15
    Amy E. O’Connell, Stefano Volpi, Kerry Dobbs, Claudia Fiorini, Erdyni Tsitsikov, Helen de Boer, Isil B. Barlan, Jenny M. Despotovic, Francisco J. Espinosa-Rosales, I. Celine Hanson, Maria G. Kanariou, Roxana Martínez-Beckerat, Alvaro Mayorga-Sirera, Carmen Mejia-Carvajal, Nesrine Radwan, Aaron R. Weiss, Sung-Yun Pai, Yu Nee Lee, Luigi D. Notarangelo, Next Generation Sequencing Reveals Skewing of the T and B Cell Receptor Repertoires in Patients with Wiskott–Aldrich Syndrome, Frontiers in Immunology, 2014, 5,

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  16. 16
    Norbert Niklas, Johannes Pröll, Johannes Weinberger, Agnes Zopf, Karin Wiesinger, Konstantin Krismer, Peter Bettelheim, Christian Gabriel, Qualifying high-throughput immune repertoire sequencing, Cellular Immunology, 2014, 288, 1-2, 31

    CrossRef

  17. 17
    Jacob D. Galson, Andrew J. Pollard, Johannes Trück, Dominic F. Kelly, Studying the antibody repertoire after vaccination: practical applications, Trends in Immunology, 2014, 35, 7, 319

    CrossRef

  18. 18
    Carsten Linnemann, Riccardo Mezzadra, Ton N. M. Schumacher, TCR repertoires of intratumoral T-cell subsets, Immunological Reviews, 2014, 257, 1
  19. 19
    William H. Rounds, Ann J. Ligocki, Mikhail K. Levin, Benjamin M. Greenberg, Douglas W. Bigwood, Eric M. Eastman, Lindsay G. Cowell, Nancy L. Monson, The Antibody Genetics of Multiple Sclerosis: Comparing Next-Generation Sequencing to Sanger Sequencing, Frontiers in Neurology, 2014, 5,

    CrossRef

  20. 20
    George Georgiou, Gregory C Ippolito, John Beausang, Christian E Busse, Hedda Wardemann, Stephen R Quake, The promise and challenge of high-throughput sequencing of the antibody repertoire, Nature Biotechnology, 2014, 32, 2, 158

    CrossRef

  21. 21
    Linling He, Devin Sok, Parisa Azadnia, Jessica Hsueh, Elise Landais, Melissa Simek, Wayne C. Koff, Pascal Poignard, Dennis R. Burton, Jiang Zhu, Toward a more accurate view of human B-cell repertoire by next-generation sequencing, unbiased repertoire capture and single-molecule barcoding, Scientific Reports, 2014, 4, 6778

    CrossRef

  22. 22
    Mikhail Shugay, Olga V Britanova, Ekaterina M Merzlyak, Maria A Turchaninova, Ilgar Z Mamedov, Timur R Tuganbaev, Dmitriy A Bolotin, Dmitry B Staroverov, Ekaterina V Putintseva, Karla Plevova, Carsten Linnemann, Dmitriy Shagin, Sarka Pospisilova, Sergey Lukyanov, Ton N Schumacher, Dmitriy M Chudakov, Towards error-free profiling of immune repertoires, Nature Methods, 2014, 11, 6, 653

    CrossRef

  23. 23
    Sven H. Petersen, Anton Sendel, Mirjam van der Burg, Lisa S. Westerberg, Unraveling the Repertoire in Wiskott–Aldrich Syndrome, Frontiers in Immunology, 2014, 5,

    CrossRef

  24. 24
    David Olivieri, Jose Faro, Bernardo von Haeften, Christian Sánchez-Espinel, Francisco Gambón-Deza, An automated algorithm for extracting functional immunologic V-genes from genomes in jawed vertebrates, Immunogenetics, 2013, 65, 9, 691

    CrossRef

  25. 25
    Debraj GuhaThakurta, Nadeem A Sheikh, T Craig Meagher, Simon Letarte, James B Trager, Applications of systems biology in cancer immunotherapy: from target discovery to biomarkers of clinical outcome, Expert Review of Clinical Pharmacology, 2013, 6, 4, 387

    CrossRef

  26. 26
    Joshua Greene, Marc R. Birtwistle, Leszek Ignatowicz, Grzegorz A. Rempala, Bayesian multivariate Poisson abundance models for T-cell receptor data, Journal of Theoretical Biology, 2013, 326, 1

    CrossRef

  27. 27
    N. Thomas, J. Heather, W. Ndifon, J. Shawe-Taylor, B. Chain, Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine, Bioinformatics, 2013, 29, 5, 542

    CrossRef

  28. 28
    Jeremy Meier, Catherine Roberts, Kassi Avent, Allison Hazlett, Jennifer Berrie, Kyle Payne, David Hamm, Cindy Desmarais, Catherine Sanders, Kevin T. Hogan, Kellie J. Archer, Masoud H. Manjili, Amir A. Toor, Fractal Organization of the Human T Cell Repertoire in Health and after Stem Cell Transplantation, Biology of Blood and Marrow Transplantation, 2013, 19, 3, 366

    CrossRef

  29. 29
    Carsten Linnemann, Bianca Heemskerk, Pia Kvistborg, Roelof J C Kluin, Dmitriy A Bolotin, Xiaojing Chen, Kaspar Bresser, Marja Nieuwland, Remko Schotte, Samira Michels, Raquel Gomez-Eerland, Lorenz Jahn, Pleun Hombrink, Nicolas Legrand, Chengyi Jenny Shu, Ilgar Z Mamedov, Arno Velds, Christian U Blank, John B A G Haanen, Maria A Turchaninova, Ron M Kerkhoven, Hergen Spits, Sine Reker Hadrup, Mirjam H M Heemskerk, Thomas Blankenstein, Dmitriy M Chudakov, Gavin M Bendle, Ton N M Schumacher, High-throughput identification of antigen-specific TCRs by TCR gene capture, Nature Medicine, 2013, 19, 11, 1534

    CrossRef

  30. 30
    Harlan Robins, Immunosequencing: applications of immune repertoire deep sequencing, Current Opinion in Immunology, 2013, 25, 5, 646

    CrossRef

  31. 31
    Dmitriy A Bolotin, Mikhail Shugay, Ilgar Z Mamedov, Ekaterina V Putintseva, Maria A Turchaninova, Ivan V Zvyagin, Olga V Britanova, Dmitriy M Chudakov, MiTCR: software for T-cell receptor sequencing data analysis, Nature Methods, 2013, 10, 9, 813

    CrossRef

  32. 32
    Maria A. Turchaninova, Olga V. Britanova, Dmitriy A. Bolotin, Mikhail Shugay, Ekaterina V. Putintseva, Dmitriy B. Staroverov, George Sharonov, Dmitriy Shcherbo, Ivan V. Zvyagin, Ilgar Z. Mamedov, Carsten Linnemann, Ton N. Schumacher, Dmitriy M. Chudakov, Pairing of T-cell receptor chains via emulsion PCR, European Journal of Immunology, 2013, 43, 9
  33. 33
    Daniel J Woodsworth, Mauro Castellarin, Robert A Holt, Sequence analysis of T-cell repertoires in health and disease, Genome Medicine, 2013, 5, 10, 98

    CrossRef

  34. 34
    Christopher S. Carlson, Ryan O. Emerson, Anna M. Sherwood, Cindy Desmarais, Moon-Wook Chung, Joseph M. Parsons, Michelle S. Steen, Marissa A. LaMadrid-Herrmannsfeldt, David W. Williamson, Robert J. Livingston, David Wu, Brent L. Wood, Mark J. Rieder, Harlan Robins, Using synthetic templates to design an unbiased multiplex PCR assay, Nature Communications, 2013, 4,

    CrossRef

  35. 35
    Gregory A. Poland, Richard B. Kennedy, Brett A. McKinney, Inna G. Ovsyannikova, Nathaniel D. Lambert, Robert M. Jacobson, Ann L. Oberg, Vaccinomics, adversomics, and the immune response network theory: Individualized vaccinology in the 21st century, Seminars in Immunology, 2013, 25, 2, 89

    CrossRef

  36. 36
    Paul D. Baum, Vanessa Venturi, David A. Price, Wrestling with the repertoire: The promise and perils of next generation sequencing for antigen receptors, European Journal of Immunology, 2012, 42, 11