Aberrant DNA methylation profile and frequent methylation of KLK10 and OXGR1 genes in hepatocellular carcinoma
Article first published online: 16 SEP 2009
Copyright © 2009 Wiley-Liss, Inc.
Genes, Chromosomes and Cancer
Volume 48, Issue 12, pages 1057–1068, December 2009
How to Cite
Lu, C.-Y., Hsieh, S.-Y., Lu, Y.-J., Wu, C.-S., Chen, L.-C., Lo, S.-J., Wu, C.-T., Chou, M.-Y., Huang, T. H.-M. and Chang, Y.-S. (2009), Aberrant DNA methylation profile and frequent methylation of KLK10 and OXGR1 genes in hepatocellular carcinoma. Genes Chromosom. Cancer, 48: 1057–1068. doi: 10.1002/gcc.20708
- Issue published online: 7 OCT 2009
- Article first published online: 16 SEP 2009
- Manuscript Accepted: 4 AUG 2009
- Manuscript Received: 6 APR 2009
- Administration of Education, Taiwan (to Chang Gung University)
- National Science Council, Taiwan. Grant Number: NSC95-2320-B-182-001
- Chang Gung Memorial Hospital. Grant Number: CMRPD160051
Investigating aberrant DNA methylation in the cancer genome may identify genes that play an important role in tumor progression. In this study, we combined differential methylation hybridization and a CpG microarray platform to characterize methylation profiles and identify novel candidate genes associated with hepatocellular carcinoma (HCC). The genomic DNA of 21 paired adjacent normal and HCC samples was used, and results were analyzed by hierarchical clustering. Twenty-seven hypermethylated candidates and 38 hypomethylated candidates were obtained. Six candidate genes from the hypermethylated group were validated by combined bisulfite restriction analysis; two genes, human kallikrein 10 gene (KLK10) and oxoglutarate (α-ketoglutarate) receptor 1 gene (OXGR1), were further analyzed by bisulfite sequencing. The DNA hypermethylation status of KLK10 and OXGR1 were subsequently examined in HCC cell lines and clinical samples using methylation-specific PCR. In 49 HCC samples, 46 (94%) showed that at least one of these two genes was highly methylated. Moreover, KLK10 and OXGR1 mRNA levels were inversely correlated (r = −0.435 and −0.497, P < 0.05) with DNA methylation as examined in paired adjacent normal and tumor samples. Statistical analyses further indicated that KLK10 hypermethylation was significantly associated with cirrhosis (P = 0.042) and HCV infection (P = 0.017) as well as inversely associated with HBV infection (P = 0.023). Furthermore, restoration of KLK10 and OXGR1 expression reduced the ability of anchorage-independent growth, and sensitized HCC cells to doxorubicin- or 5-fluorouracil-induced cytotoxicity. Our results suggest that the hypermethylated KLK10 and OXGR1 are frequent in HCC and may be useful as markers for clinical application. © 2009 Wiley-Liss, Inc.