Genetic Epidemiology

Copyright © 2012 Wiley Periodicals Inc.

Cover image for Vol. 35 Issue S1

Supplement: Genetic Analysis Workshop 17: Approaches to Analysis of Next-Generation Sequencing Data

2011

Volume 35, Issue S1

Pages S1–S119

Issue edited by: Andreas Ziegler, Jean W. MacCluer, Laura Almasy

    1. Introduction to genetic analysis workshop 17 summaries (pages S1–S4)

      Andreas Ziegler, Saurabh Ghosh, Thomas D. Dyer, John Blangero, Jean MacCluer and Laura Almasy

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20641

    2. Brief review of regression-based and machine learning methods in genetic epidemiology: the Genetic Analysis Workshop 17 experience (pages S5–S11)

      Abhijit Dasgupta, Yan V. Sun, Inke R. König, Joan E. Bailey-Wilson and James D. Malley

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20642

    3. Statistical analysis of rare sequence variants: an overview of collapsing methods (pages S12–S17)

      Carmen Dering, Claudia Hemmelmann, Elizabeth Pugh and Andreas Ziegler

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20643

    4. Detecting multiple causal rare variants in exome sequence data (pages S18–S21)

      Kenny Q. Ye and Corinne D. Engelman

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20644

    5. Quality control issues and the identification of rare functional variants with next-generation sequencing data (pages S22–S28)

      Claudia Hemmelmann, E. Warwick Daw and Alexander F. Wilson

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20645

    6. Incorporating biological information into association studies of sequencing data (pages S29–S34)

      Gary Chen, Peng Wei and Anita L. DeStefano

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20646

    7. Dealing with high dimensionality for the identification of common and rare variants as main effects and for gene-environment interaction (pages S35–S40)

      Heike Bickeböller, Jeanine J. Houwing-Duistermaat, Xuefeng Wang and Xiting Yan

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20647

    8. Population-based and family-based designs to analyze rare variants in complex diseases (pages S41–S47)

      Rémi Kazma and Julia N. Bailey

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20648

    9. Analysis of exome sequences with and without incorporating prior biological knowledge (pages S48–S55)

      Junghyun Namkung, Paola Raska, Jia Kang, Yunlong Liu, Qing Lu and Xiaofeng Zhu

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20649

    10. Inflated type I error rates when using aggregation methods to analyze rare variants in the 1000 Genomes Project exon sequencing data in unrelated individuals: summary results from Group 7 at Genetic Analysis Workshop 17 (pages S56–S60)

      Nathan Tintle, Hugues Aschard, Inchi Hu, Nora Nock, Haitian Wang and Elizabeth Pugh

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20650

    11. Multiple testing in high-throughput sequence data: experiences from Group 8 of Genetic Analysis Workshop 17 (pages S61–S66)

      Inke R. König, Jeremie Nsengimana, Charalampos Papachristou, Matthew A. Simonson, Kai Wang and Jason A. Weisburd

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20651

    12. Joint analyses of disease and correlated quantitative phenotypes using next-generation sequencing data (pages S67–S73)

      Phillip E. Melton and Nathan Pankratz

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20653

    13. Incorporating linkage information into a common disease/rare variant framework (pages S74–S79)

      Anthony L. Hinrichs and Brian K. Suarez

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20654

    14. Rare variants, common markers: synthetic association and beyond (pages S80–S84)

      Jack W. Kent Jr

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20655

    15. Detecting rare variant associations: methods for testing haplotypes and multiallelic genotypes (pages S85–S91)

      Rita M. Cantor and Marsha Wilcox

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20656

    16. Regression and data mining methods for analyses of multiple rare variants in the Genetic Analysis Workshop 17 mini-exome data (pages S92–S100)

      Joan E. Bailey-Wilson, Jennifer S. Brennan, Shelley B. Bull, Robert Culverhouse, Yoonhee Kim, Yuan Jiang, Jeesun Jung, Qing Li, Claudia Lamina, Ying Liu, Reedik Mägi, Yue S. Niu, Claire L. Simpson, Libo Wang, Yildiz E. Yilmaz, Heping Zhang and Zhaogong Zhang

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20657

    17. Identification of genetic association of multiple rare variants using collapsing methods (pages S101–S106)

      Yan V. Sun, Yun Ju Sung, Nathan Tintle and Andreas Ziegler

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20658

    18. Lessons learned from Genetic Analysis Workshop 17: transitioning from genome-wide association studies to whole-genome statistical genetic analysis (pages S107–S114)

      Alexander F. Wilson and Andreas Ziegler

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20659

    19. Effect of linkage disequilibrium on the identification of functional variants (pages S115–S119)

      Alun Thomas, Haley J. Abel, Yanming Di, Laura L. Faye, Jing Jin, Jin Liu, Zheyan Wu and Andrew D. Paterson

      Article first published online: 29 NOV 2011 | DOI: 10.1002/gepi.20660

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