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RNAsnp: Efficient Detection of Local RNA Secondary Structure Changes Induced by SNPs

  1. Radhakrishnan Sabarinathan1,2,†,
  2. Hakim Tafer3,†,
  3. Stefan E. Seemann1,2,
  4. Ivo L. Hofacker1,4,5,
  5. Peter F. Stadler1,3,4,6,7,8,*,
  6. Jan Gorodkin1,2,*

Article first published online: 20 MAR 2013

DOI: 10.1002/humu.22273

Issue

Human Mutation

Human Mutation

Volume 34, Issue 4, pages 546–556, April 2013

Additional Information

How to Cite

Sabarinathan, R., Tafer, H., Seemann, S. E., Hofacker, I. L., Stadler, P. F. and Gorodkin, J. (2013), RNAsnp: Efficient Detection of Local RNA Secondary Structure Changes Induced by SNPs. Hum. Mutat., 34: 546–556. doi: 10.1002/humu.22273

Author Information

  1. 1

    Center for non-coding RNA in Technology and Health, University of Copenhagen, Frederiksberg, Denmark

  2. 2

    Department of Veterinary Clinical and Animal Sciences, University of Copenhagen, Frederiksberg, Denmark

  3. 3

    Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, Leipzig, Germany

  4. 4

    Department of Theoretical Chemistry, University of Vienna, Wien, Austria

  5. 5

    Bioinformatics and Computational Biology Group, University of Vienna, Wien, Austria

  6. 6

    Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany

  7. 7

    Fraunhofer Institut für Zelltherapie und Immunologie – IZI, Leipzig, Germany

  8. 8

    Santa Fe Institute, Santa Fe, New Mexico

  1. †

    These authors contributed equally to this work.

*Correspondence to: Jan Gorodkin, Center for non-coding RNA in Technology and Health, University of Copenhagen, Grønnegårdsvej 3, Frederiksberg C, 1870, Denmark. E-mail: gorodkin@rth.dk or Peter F. Stadler, University Leipzig, Computer Science, Haertelstrasse 16–18, Leipzig, 04109, Germany. E-mail: studla@bioinf.uni-leipzig.de

  1. †

    These authors contributed equally to this work.

  2. Contract grant sponsors: Danish Center for Scientific Computing (DCSC, DeiC); European Community Seventh Framework Programme project QUANTOMICS (222664); German BMBF project ICGC MMML-Seq (01KU1002J); Danish Council for Strategic Research (Programme Commission on Strategic Growth Technologies); Danish Council for Independent Research (Technology and Production Sciences).

  3. Communicated by Rachel Karchin

Publication History

  1. Issue published online: 20 MAR 2013
  2. Article first published online: 20 MAR 2013
  3. Accepted manuscript online: 11 JAN 2013 07:53AM EST
  4. Manuscript Accepted: 18 DEC 2012
  5. Manuscript Received: 17 AUG 2012

Funded by

  • Danish Center for Scientific Computing
  • European Community Seventh Framework Programme project QUANTOMICS. Grant Number: 222664
  • German BMBF project ICGC MMML-Seq. Grant Number: 01KU1002J
  • Danish Council for Strategic Research
  • Danish Council for Independent Research
  • computational infrastructure of this project
Corrected by:

Erratum: RNAsnp: Efficient Detection of Local RNA Secondary Structure Changes Induced by SNPs

Vol. 34, Issue 6, 925, Article first published online: 9 APR 2013

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