This article analyses the performance of an integrated hydrological ensemble prediction system adapted to small to mid-sized catchments (100–600 km2) situated in the Cévennes-Vivarais region (Southern France) and characterized by short lag times (3–12 h). In this framework, flood forecasts need hourly Probabilistic Quantitative Precipitation Forecasts (PQPF) so as to provide early warning with 24–72 h of anticipation. Here, two sources of PQPF at daily and subdaily (6 h) meteorological time steps are considered: Ensemble Prediction Systems from the European Centre for Medium-range Weather Forecast (ECMWF) and analogy-based PQPF provided in real-time at the Laboratoire d'étude des Transferts en Hydrologie et Environnement. The two PQPF are firstly disaggregated to respect the required hydrological hourly time step, through either the use of a stochastic rainfall generator or the application of a multimodel approach. Then, disaggregated PQPF are used as input to a hydrological model, which is called TOPSIMPL, to provide hourly ensemble discharge forecasts up to 48 h ahead. Illustration and evaluation of ensemble discharge forecasts issued in near real-time conditions are given for some recently observed flash flood events. It is shown that hourly discharge forecasts are first-order conditioned by the accuracy of PQPF at daily or subdaily time step. Six-hour ensemble prediction systems correctly reproduce the rainfall temporal dynamics, whereas daily analogy-based PQPF are less underdispersive in terms of rainfall amounts. As a result, the merging of the two sources of PQPF substantially increases the performance of discharge forecasts, the contribution of a more sophisticated hourly rainfall generator becoming marginal. Copyright © 2012 John Wiley & Sons, Ltd.