Factors controlling the temporal variability in dissolved oxygen regime of salmon spawning gravels
Article first published online: 17 OCT 2012
Copyright © 2012 John Wiley & Sons, Ltd.
Volume 28, Issue 1, pages 86–103, 01 January 2014
How to Cite
Sear, D. A., Pattison, I., Collins, A. L., Newson, M. D., Jones, J. I., Naden, P. S. and Carling, P. A. (2014), Factors controlling the temporal variability in dissolved oxygen regime of salmon spawning gravels. Hydrol. Process., 28: 86–103. doi: 10.1002/hyp.9565
- Issue published online: 16 DEC 2013
- Article first published online: 17 OCT 2012
- Accepted manuscript online: 27 SEP 2012 05:55PM EST
- Manuscript Accepted: 21 SEP 2012
- Manuscript Received: 20 JAN 2012
- 1999. Water temperatures within spawning beds in two chalk streams and implications for salmonid egg development. Hydrological Processes 13(3): 439–446. .
- 1999. Sediment transport and the siltation of salmonid spawning gravels in a groundwater dominated river. Hydrological Processes 11(14): 447–458. , .
- 1996. Sediment Intrusion and dissolved oxygen transport model – SIDO. Technical Report No. 5, USDA-ARS National Sedimentation laboratory, Oxford, Mississippi; 232p. , , .
- 2011. Detection of Regional Trends in Salmonid Habitat in Coastal Streams, Oregon. Transactions of the American Fisheries Society 140(1): 52–66. , , .
- 1988. Channelised Rivers. John Wiley & Sons: Chichester, UK; 320. .
- 1950. Sediment transportation. In Engineering hydraulics, Rouse H (ed). John Wiley and Sons, Inc.: New York; 135–154. .
- 2011. Physical controls on salmon spawning habitat quality and embryo fitness: an integrated analysis. Unpublished PhD thesis, Geography and Environment, University of Southampton, UK, 351p. .
- 1984. Deposition of fine and coarse sand in an open work gravel bed. Canadian Journal of Fisheries and Aquatic Sciences 41: 263–270. .
- 1985. Oxygen flux through salmonid spawning gravels, Freshwater Biological Association Project, 73, FBA Windermere, UK, 36p. .
- 1982. Structure, composition and bulk properties of upland stream gravels. Earth Surface Processes and Landforms 7(4): 349–365. , .
- 2003. Modelling fine sediment accumulation in salmonid spawning gravels. DEFRA, Final Project Report, London; 21pp. , , , .
- 1985. Modelling the transfer of oxygen between the stream and the stream substrate with application to the survival rates of salmonid embryos. Colorado State University, Department of Agriculture and Chemical Engineering ARS, Report No. 5602 20813-008A; 99p. , .
- 1984. Report of engineering and biological literature pertaining to the aquatic environment with special emphasis on dissolved oxygen and sediment effect on salmonid habitat. Colorado State University, Department of Agriculture and Chemical Engineering, ARS Report No. 5602 20813–008A. , , .
- 2008. Parameters influencing dissolved oxygen in the boundary layer of rainbow trout (Oncorhynchus mykiss) embryos and larvae. Journal of Experimental Biology 210: 1435–1445. , , , .
- 2011. ‘Real’ hydromorphological quality: linking physical diversity and biodiversity on the River Rede, Northumberland. Unpublished MSc Thesis, School of Applied Sciences, Cranfield University; 78pp. .
- 2005. Storage of fine-grained sediment and associated contaminants within the channels of lowland permeable catchments in the UK. In Proceedings of symposium Sediment Budgets 1 held during the Seventh IAHS Scientific Assembly, Walling DE, Horowitz A (eds). Foz do Iguacu, Brazil, April 2005, IAHS publication 291; 259–268. , , .
- 2011. Sediment targets for informing river catchment management:international experience and prospects. Hydrological Processes 25(13): 2112–2129. DOI: 10.1002/hyp.7965. , , , , , .
- 2008. Development of guideline sediment targets to support management of sediment inputs into aquatic systems. Natural England Report NERR008. Natural England, Sheffield, UK ISSN 1754–1956; 84pp. , , , .
- 1991. Measurement of stream water temperature and biological applications to salmonid fishes, Grayling and Dace (including ready reckoners). Occasional Publication 29, Freshwater Biological Association; 34pp. .
- 1989. Observations on siting, dimensions and structure of salmonid redds. Journal of Fish Biology 34: 119–134. , .
- 1994. Groundwater and the selection of spawning sites by brook trout Salvelinus fontinalis. Canadian Journal of Fisheries Aquatic Sciences 52: 1733–1740. , .
- 1965. Application of mass transport theory to the problem of respiration of fish eggs. Journal of the fisheries Research Board of Canada 22: 159–170. .
- 2008. Bed disturbance processes and physical mechanisms of scour in salmonid spawning habitat. In Salmonid Spawning habitat in Rivers; Physical controls, biological responses and approaches to remediation, Sear DA, DeVries P (eds). AFS: Bethesda, Maryland, USA; 121–148. .
- Environment Agency. 2008. The River Tyne Salmon Action Plan Review. APEM Scientific Report EA 410230, Environment Agency, Tyneside House, Newcastle-upon-Tyne; 67p.
- 1995. Importance of surface-subsurface exchange in stream ecosystems: The hyporheic zone. Limnology and Oceanography 40(1): 159–164. .
- 1995. An Instrument to Monitor Infiltration of Fine Sediment into Stable Gravel Stream Beds. Aqmcultural Engineering 14(4): 289–296. , .
- 2000. Reactive uptake of trace metals in the hyporheic zone of a mining-contaminated stream, Pinal Creek, Arizona. Environmental Science and Technology 34: 1150–1155. , .
- 2012. Asphyxiation and entombment mechanisms in fines rich spawning substrates: experimental evidence with brook trout (Salvelinus fontinalis) embryos. Canadian Journal of Fisheries and Aquatic Sciences 69: 587–599. , , , , , .
- 2004. An assessment of factors influencing the ability of UK spawning gravels to support the respiratory requirements of Atlantic Salmon (Salmo salar) embryos. Unpublished PhD Dissertation, School of Geography, University of Southampton; 322pp. .
- 2005a. Fine sediment accumulation in salmon spawning gravels and the survival of incubating salmon progeny: implications for spawning habitat management. Science of the Total Environment 344: 241–258. , , .
- 2005b. Impact of clay particles on cutaneous exchange of oxygen across the chorion of Atlantic salmon eggs. Journal of Fish Biology 66: 1681–1691. , , , .
- 2005c. Refinement and re-calibration of a conductiometric standpipe method of assessing interstitial flow velocities. Hydrobiologia 545: 249–256. , , .
- 2007a. A field-based assessment of oxygen supply to incubating Atlantic salmon embryos. Hydrological Processes 21: 3087–3100. , , .
- 2007b. Review of factors influencing the availability of dissolved oxygen to incubating salmon embryos. Hydrological Processes 21: 323–324. , , .
- 2005. Habitat quality of historic snake river Fall Chinook salmon spawning locations and implications for incubation survival, part 2: intragravel water quality. River Research and Applications 21: 469–483. , .
- 1967. The sediment hydraulics of the River Tyne. Unpublished PhD Thesis, Dept. of Civil Engineering, University of Durham; 525pp. .
- 2009. Seasonal hyporheic temperature dynamics over riffle bedforms. Hydrological Processes 23: 2178–2194. , , .
- 1975. Some Effects of Groundwater on Brown Trout Redds. Transactions of the American Fisheries Society 104: 100–110. .
- 2005. Habitat quality of historic Snake River fall Chinook salmon spawning locations and implications for incubation survival. Part 1: substrate quality. River Research and Applications 21: 455–467. , , .
- 1993. A mathematical model of salmonid spawning habitat. Journal of the American Water Resources Association 29: 435–444. , , , .
- 2007. The sedimentation of salmonid spawning gravels in the Hampshire Avon catchment, UK: implications for the dissolved oxygen content of intragravel water and embryo survival. Hydrological Processes 21: 770–788. , .
- 2002. Evaluating Criteria for the Protection of Freshwater Aquatic Life in Washington's Surface Water Quality Standards: Dissolved Oxygen. Publication Number 00-10-071, Washington State Department of Ecology, Olympia, WA, USA; 90pp. .
- 2006. Holocene flood records from palaeochannel sediments; the River Rede, North Tyne Basin, UK. Department of Geography, University of Newcastle upon Tyne; 277p. .
- 2011. The impacts of fine sediments on freshwater fish. Hydrological Processes 25: 1800–1821. , , , , .
- 2008. Long term adjustment of morphology and sediment of a regulated river: the Rede, Northumberland. Unpublished BSc Dissertation, Northumbria University; 54pp. .
- 1963. Sediment transport mechanics: Introduction and properties of sediment. Journal of the Hydraulics Division 89(1): 263–266. .
- 2000. Release of trace elements from sandy aquifer sediments controlled by artifical recharge. In Groundwater Research, Rosbjerg R (ed). Balkema: Rotterdam.;191–192. , , , , .
- 2009. Geomorphology and Sediments of the Hyporheic Zone, In The Hyporheic Handbook. A handbook on the groundwater–surface water interface and hyporheic zone for environment managers, Lerner DN. (ed). Integrated catchment science programme. Environment Agency Science report: SC050070, Chapter 3, Bristol, UK; 231–236. , , , .
- 2010. An assessment of the fine sediment dynamics in an upland river system: INCA-Sed modifications and implications for fisheries. Science of the Total Environment 408(12): 2555–2566. DOI: 10.1016/j.scitotenv.2010.02.030 , , , , , , , , .
- Lerner DN (ed). 2009. The Hyporheic Handbook. A handbook on the groundwater–surface water interface and hyporheic zone for environment managers. Integrated catchment science programme. Environment Agency Science report: SC050070; 264pp.
- 1999. Oxygen supply and the adaptations of animals in groundwater. Freshwater Biology 40: 1–30. , .
- 2003. Survival of salmonid eggs in gravel bed streams: effects of groundwater – surface water interactions. River Research and Applications 19: 303–316. , , .
- 2004. Hydrological influences on hyporheic water quality: implications for salmon egg survival. Hydrological Processes 18: 1543–1560. , , , , , .
- 2006. High frequency logging technologies reveal state dependant hyporheic process dynamics: implications for hydroecological studies. Hydrological Processes 20: 615–622. , , .
- 2008. Hyporheic influences on salmon embryo survival and performance. In Salmonid Spawning habitat in Rivers; Physical controls, biological responses and approaches to remediation, Sear DA, DeVries P (eds). AFS: Bethesda, Maryland, USA; 225–248. , , , .
- 2010. Hyporheic zone processes in a canalised agricultural stream: implications for salmonid embryo survival. Fundamental and Applied Limnology 176(4): 319–336. , , , , .
- 2011. Is insterstitial velocity a good predictor of salmonid embryo survival? Transactions of the American Fisheries Society 140: 898–904. , , , , .
- 2012. The influence of hydrology and hydraulics on salmonids between spawning and emergence: implications for the management of flows in regulated rivers. Fisheries Management and Ecology. DOI: 10.1111/j.1365-2400.2011.00836.x , , , , .
- 2001. Stage dependent variability in tractive force distribution through a riffle-pool sequence. Catena 44: 85–109. , , , .
- 1982.Effect of sediment transport and flow regulation on the ecology of gravel bed rivers. In Gravel bed rivers, Hey RD, Bathurst JC, Thorne CR (eds). J. Wiley: New York, USA; 819–842. .
- 2003. Relative roles of stream flow and sedimentary conditions in controlling hyporheic exchange. Hydrobiologia 494: 291–297. , .
- SIDO-UK: Sediment Intrusion and Dissolved Oxygen in Salmonid redds in UK rivers. Hydrological Processes. , , , , . In Review.
- 2011. Spatial habitat patterning of the Freshwater Pearl Mussel, Margaritifera margaritifera, in the River Rede, North East England. Unpublished MSc Thesis, Durham University. .
- 1993. Physical habitat changes and macroinvertebrate response to river regulation: the River Rede UK. Regulated Rivers: Research & Management 8: 167–178. , , .
- 2000. Time-integrated sampling of fluvial suspended sediment: a simple methodology for small catchments. Hydrological Processes 14: 2589–2602. , , .
- 2011. Risk-based modelling of diffuse land use impacts from rural landscapes upon salmonid fry abundance. Ecological Modelling 222: 4,1016–1029. , , , .
- 1998. Sediment gravel bed rivers: ecological and biological considerations. In Gravel-bed rivers in the environment, Klingeman PC, Beschta RL, Komar PD, Bradley JB (eds). Water Resources Publications: Highlands Ranch, Colorado; 199–228. .
- 2004. An instrument to record sediment movement in bedrock channels. In Erosion and sediment transport measurement in rivers: technological and methodological advances, vol. 283, Bogen J, Fergus T, Walling DE (eds). IAHS Pub.: Wallingford, UK; 228–235. , , .
- 1987. Vertical distribution of sediment and organic debris in Coho Salmon (onorchynchus kiutch) redds in three small Oregon streams. Canadian Journal of Fisheries and Aquatic Sciences 45: 742–746. , .
- 1993. Fine sediment infiltration into gravel spawning beds within a regulated river experiencing floods and the ecological implications for salmonids. Regulated Rivers: Research & Management 8: 373–390. .
- 2010. Integrating science and practice for the sustainable management of in-channel salmonid habitat. In Salmonid Fisheries:Freshwater habitat management, Kemp P (ed). Blackwell Publishing Ltd: Chichester, UK; 81–118. .
- 2008a. The significance and mechanics of fine sediment infiltration and accumulation in gravel spawning beds. In Salmonid Spawning habitat in Rivers; Physical controls, biological responses and approaches to remediation, vol. 2008, Sear DA, DeVries P (eds). AFS: Bethesda, Maryland, USA; 149–174. , , , .
- 2008b. Science and the practice of salmonid spawning habitat remediation. In Salmonid Spawning habitat in Rivers; Physical controls, biological responses and approaches to remediation, Sear DA, DeVries P (eds). AFS: Bethesda, Maryland, USA; 1–13. , , .
- Simetric. 2011. http://www.simetric.co.uk/si_materials.htm accessed November 2012.
- 2009. Seasonal and Inter-annual variability in hyporheic water quality revealed by continuous monitoring in a Salmon spawning stream. River Research and Applications 25: 1304–1319. , , , .
- 1986. Draft Tucannon River offsite study: dissolved oxygen consumption. USDA unpublished draft report; 28 pp. , .
- 1987. Principles of surface water quality modeling and control, Harper International Edition. Harper and Row: New York, NY; 488. , .
- USDA. 2011. http://www.ars.usda.gov/Business/docs.htm?docid=5226, accessed December 2011.
- 1977. Assessing the accuracy of suspended sediment rating curves for a small basin. Water Resources Research 13: 531–538. .
- 1975. Mass transfer theory and the culture of fish eggs. In Chemistry and Physics of Aqueous Gas Solutions, Adams WA (ed). The Electro Chemical Society: Princeton; 521. .
- 2004. Trade-offs associated with sediment maintenance flushing-flows:A simulation approach for exploring non-inferior options. River Research and Applications 20: 591–604. , .