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Additional Supporting Information may be found in the online version of this article.

FilenameFormatSizeDescription
IBD_21936_sm_SuppFigS1A.eps249KSupporting Information Figure S1. Weighted Neighbor Joining trees with bootstrap support (100 repetitions) showing sequences identified as belonging to the ‘Lachnospiraceae’. Each leaf node indicates an OTU or a reference strain (RDP database). a, CP patients off antibiotics; b, CP patients on antibiotics; c, FAP patients; d, NP patients. Trees were generated using the RDP Treebuilder software. Trees show representative OTU, not the prevalence of OTU sequences.
IBD_21936_sm_SuppFigS1B.eps1324KSupporting Information Figure S1.
IBD_21936_sm_SuppFigS1C.eps1535KSupporting Information Figure S1.
IBD_21936_sm_SuppFigS1D.eps1496KSupporting Information Figure S1.
IBD_21936_sm_SuppFigS2A.eps1474KSupporting Information Figure S2. Weighted Neighbor Joining trees with bootstrap support (100 repetitions) showing sequences identified as belonging to the ‘Clostridia’. Each leaf node indicates an OTU or a reference strain (RDP database). a, CP patients off antibiotics; b, CP patients on antibiotics; c, FAP patients; d, NP patients. Trees were generated using the RDP Treebuilder software. Trees show representative OTU, not the prevalence of OTU sequences.
IBD_21936_sm_SuppFigS2B.eps1604KSupporting Information Figure S2.
IBD_21936_sm_SuppFigS2C.eps1547KSupporting Information Figure S2.
IBD_21936_sm_SuppFigS2D.eps1410KSupporting Information Figure S2.

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