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Abstract

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  2. Abstract
  3. LITERATURE CITED

A new tandemly repeated (satellite) DNA family namely Agi160, from Lacerta agilis and Lacerta strigata (Lacerta sensu stricto (s. str.), Linnaeus 1758) have been cloned and sequenced. Agi160 is found in the above two species, as well as two other representatives of the same genus, L. viridis and L. media. DNA hybridization did not reveal it in Darevskia, Podarcis, Zootoca, Eremias, Ophisops, and Gallotia – the other genera of the family Lacertidae. The results suggest that Agi160 is a Lacerta s. str. specific family of tandem DNA repeats. However, a comparison between sequences of Agi160 and CLsat repeat units revealed 60 bp regions 62–74% identical. The latter is a satellite DNA family typical for Darevskia (syn. “L. saxicola complex”) (Grechko et al., Molecular-genetic classification and phylogenetic relatedness of some species of Lacertidae lizards by taxonoprint data. Mol Biol 32:172–183, 1988.). Both Agi160 and CLsat tandem repeats share several common features (e.g., the same AT content and distribution of multiple short A-T runs, internal structure of repeated units, the presence of conservative regions). These data are indicative of their common origin and a possibly strong selective pressure upon conserving both satellites. A comparative analysis of structure, organization, and abundance of these two families of satDNA reveals evolutionary pathways that led to their formation and divergence. The data are consistent with the hypotheses of the concerted evolution of satellite DNA families. The possibility of use of Agi160 as a phylogenetic tool, defining relationships within Lacerta s. str., as well as within the whole family of Lacertidae is discussed. J. Exp. Zool. (Mol. Dev. Evol.) 000:1–12, 2004. © 2004 Wiley-Liss, Inc.

LITERATURE CITED

  1. Top of page
  2. Abstract
  3. LITERATURE CITED
  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215:403410.
  • Arnold EN. 1989. Towards a phylogeny and biogeography of the Lacertidae: relationships within an Old-World family of lizards derived from morphology. Bull Br Mus (Nat His) Zool 55:209257.
  • Arribas OJ. 1999. Phylogeny and relationships of the mountain lizards of Europe and near East (Archeolacerta Mertens, 1921, sensu lato) and their relationships among the Eurasian Lacertid radiation. Russ J Herpetol 6:122.
  • Beridze TG. 1986. Satellite DNA. Springer, Berlin, Heidelberg, New York, Tokyo, 326.
  • Bischoff W. 1969. Lacerten-Bastarde. Lacerta strigata × Lacerta a. agilis und Lacerta strigata × Lacerta viridis meridionalis. Aquarien Terrarien, Leipzig 16:262265.
  • Bischoff W. 1973. Lacertenbastarde II. Zoologischer Garten NF, Berlin 43:278291.
  • Bonnewell V, Fowler RF, Skinner DM. 1983. An inverted repeat borders a fivefold amplification in satellite DNA. Science 221: 862865.
  • Brodsky LI, Ivanov VV, Kalaidzidis YaL, Leontovich AM, Nikolaev VK, Feranchuk SI, Drachev VA. 1995. GeneBee-NET: Internet-based server for analyzing biopolymers structure. Biochemistry 60:923928.
  • Capriglione T. 1995. Satellite DNA and phylogeny of Lacertid lizards. In: Llorente GA, Montori A, Santos X, Carretero MA, editors. Scientia Herpetologica p. 6870.
  • Capriglione T, Cardone A, Odierna G, Olmo E. 1991. Evolution of a centromeric satellite DNA and phylogeny of lacertid lizards. Comp Biochem Physiol B 100:641645.
  • Castagnone-Sereno P, Semblat JP, Leroy F, Abad P. 1998. A new AluI satellite DNA in the root-node nematode Meloidogyne fallax: relationships with satellites from the sympatric species M. halpa and M. chitwoodi. Mol Biol Evol 15:11151122.
  • Charlesworth B, Sniegowski P, Stephan W. 1994. The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371:215220.
  • Ciobanu D, Roudykh IA, Grechko VV, Kramerov DA. 2001. Molecular mechanisms of satellite DNA evolution in a group of closely related Caucasian rock lizards. In: Piruzian E, Volkova L, et al., editors. International Symposium Molecular Mechanisms of Genetic Processes and Biotechnology, Moskow. Thesis p 26.
  • Ciobanu D, Grechko VV., Darevsky IS. 2003. Molecular Evolution of Satellite DNA CLsat in Lizards from the Genus Darevskia (Sauria: Lacertidae): Correlation with Species Diversity. Russ J Genetics 39:15271541
  • Cox R, Mirkin SM. 1997. Characteristic enrichment of DNA repeats in different genomes. Proc Natl Acad Sci USA 94:52375242.
  • Darevsky IS. 1990. Lizard of the genus Lacerta from the middle sarmatian lake deposits of the Northern Caucasus. Proc Zool Inst Leningrad 207:139142.
  • Darevsky IS, Szczerbak NN, Peters G., et al. 1976. Origin and phylogeny of Lacerta agilis species. In: YablokovAV, editor. Sand Lizard, Nauka, Moscow. p 91–95.
  • Elder JF, Turner BJ. 1995. Concerted evolution of repetitive DNA sequences in eukaryotes. Q Rev Biol 70:297320.
  • Dover GA, Brown S, Coen E, Dallas J, Strachan T, Trick M. 1982. The dynamics of genome evolution and species differentiation. In: DoverGA, FlavelRB, editors. Genome evolution. Academic Press, London.
  • Gottesfeld JM, Luger K. 2001. Energetics and affinity of the histone octamer for defined DNA sequences. Biochemistry 40:1092710933.
  • Grechko VV. 2002. Molecular DNA markers in phylogeny and systematics. Russ J Genetics 38:851868. Review.
  • Grechko VV, Ryabinin DM, Fedorova LV, Rudykh IA, Fedorov AN, Ryskov AP, Semenova SK, Darevsky IS. 1998. Molecular-genetic classification and phylogenetic relatedness of some species of Lacertidae lizards by taxonoprint data. Mol Biol 32:172183.
  • Harris DJ, Arnold EN, Thomas RH. 1998. Relationships of lacertid lizards (Reptilia: Lacertidae) estimated from mitochondrial DNA sequences and morphology. Proc R Soc Lond B 265:19391948.
  • Jin L, Nei M. 1990. Limitations of the evolutionary parsimony method of phylogenetic analysis. Mol Biol Evol 7:82102.
  • Kato M, Yoshida M. 1995. Nucleotide sequence of a major satellite DNA element isolated from a saltwater fish Sillago japonica. Mol Biol Rep 22:3335.
  • King LM, Cummings MP. 1997. Satellite DNA repeat sequence variation is low in three species of burying beetles in the genus Nicroporus (Coleoptera: Silphidae). Mol Biol Evol 14:10881095.
  • Lee SY, Rasheed S. 1990. A simple procedure for maximum yield of high-quality plasmid DNA. Biotechniques 9:676679.
  • Lobov IB, Tsutsui K, Mitchell AR, Podgornaya OI. 2001. Specificity of SAF-A and lamin B binding in vitro correlates with the satellite DNA bending state. J Cell Biochem 83:218229.
  • Mayer W, Benyr G. 1994. Albumin evolution and phylogenese in der familie Lacertidae. Ann Naturhist Mus Wien 96:621648.
  • Nettmann HK, Rykena S. 1974. Eine gelungene Kreuzung von Lacerta t. trilineata mit Lacerta v. viridis (Sauria, Lacertidae). Salamandra, Frankfurt/Main 10:8385.
  • Olmo E. 1991. Genome variations in the transition from amphibians to reptiles. J Mol Evol 33:6875.
  • Olmo E, Odierna G, Capriglione T. 1991. Genome evolution in reptiles. Symposium on the evolution of terrestrial vertebrates. Ghiara G et al., editors. Selected symposia and Monographs UZI 4. Mucchi, Modena. p 255267.
  • Patterson C. 1988. Homology in Classical and Molecular Biology. Molecular Biology and Evolution 5:603625.
  • Plohl M, Ugarkovic D. 1994. Analysis of divergence of Alphitobius diaperinus satellite DNA – roles of recombination, replication slippage and gene conversion. Mol Gen Genet 242:297304.
  • Plohl M, Mestrovic N, Bruvo B, Ugarkovic D. 1998. Similarity of structural features and evolution of satellite DNAs from Palorus subdepresus (Coleoptera) and related species. J Mol Evol 46:234239.
  • Rudykh IA, Grechko VV, Kramerov DA, Darevsky IS. 1999. Distribution of HindIII-repeats in genomes of Caucasian lizards of the Lacerta species reflect their phylogenetic affiliation. Dokl Akad Nauk 367:563566.
  • Rykena S. 1991. Hybridization experiment as tests for species boundaries in the genus Lacerta sensu stricto. Mitt Zool Mus Berl 1:5567.
  • Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning: A laboratory manual, Second Edition. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
  • Stephan W. 1989. Tandem-repetitive noncoding DNA: forms and forces. Mol Biol Evol 6:198212.
  • Tautz D, Trick M, Dover GA. 1986. Cryptic simplicity in DNA is a major source of genetic variation. Nature 322:652656.
  • Trifonov EN. 1999. Tuning function of tandemly repeating sequences: a molecular device for fast adaptation. Proc Intern Conf Evol Genomics. Costa Rica. Thesis. p 74
  • Van de Peer Y, De Wachter R. 1994. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Applic Biosci 10:569570.
ms

microsatellite

bp

base pairs