Conflict of interest: None.
Taste and odorant receptors of the coelacanth—A gene repertoire in transition
Article first published online: 18 SEP 2013
© 2013 Wiley Periodicals, Inc.
Journal of Experimental Zoology Part B: Molecular and Developmental Evolution
Special Issue: Genome of the African Coelacanth
Volume 322, Issue 6, pages 403–414, September 2014
How to Cite
2013. Taste and odorant receptors of the coelacanth—A gene repertoire in transition. J. Exp. Zool. (Mol. Dev. Evol.) 322B:403–414., , , , , .
Barbara Picone, Uljana Hesse, and Sumir Panji contributed equally to this work.
- Issue published online: 6 AUG 2014
- Article first published online: 18 SEP 2013
- Manuscript Accepted: 5 AUG 2013
- Manuscript Revised: 2 AUG 2013
- Manuscript Received: 12 MAR 2013
- The South African Research Chairs Initiative of the Department of Science and Technology
- National Research Foundation. Grant Number: 64751
Additional supporting information may be found in the online version of this article at the publisher's web-site.
|jezb22531-sm-0001-SupFig-S1.tif||111932K||Figure S1. Phylogenetic tree of the OR genes with all gene names and bootstrap values. The tree was constructed using Maximum Likelihood (ML) and an LG substitution model as the best fit for the protein dataset. Six non-OR GPCR genes were used as outgroup (black). Blue = zebrafish ORs, green = human ORs, red = coelacanth ORs.|
|jezb22531-sm-0001-SupFig-S2.tif||25497K||Figure S2. Conservation of amino acids in the 15 putative L. chalumnae V1Rs as compared to conserved amino acids in the ORAs of teleost fish (Saraiva and Korsching, 2007) and V1Rs in mouse (Pfister and Rodriguez, 2005). The sequence logo was constructed using WebLogo (Crooks et al., 2004).|
|jezb22531-sm-0001-SupFig-S3.tif||15105K||Figure S3. Phylogenetic tree of the V1R/ORA genes including five putative lamprey ORAs. The tree was constructed using Maximum Likelihood (ML) and a JTT substitution model as the best fit for the protein dataset. Zebrafish T2Rs served as outgroup (black). Gray = sea lamprey ORAs, violet = elephant shark ORAs; blue = teleost ORAs (zebrafish), green = tetrapod V1Rs (frog, lizard, human), red = coelacanth V1Rs.|
|jezb22531-sm-0001-SupTab-S1.xls||48K||Table S1. Annotations for all L. chalumnae chemosensory receptors identified in this study.|
|jezb22531-sm-0001-SupTab-S2.xls||168K||Table S2. Mapping information for the protein identifiers used in this study to the respective gene/protein identifiers from the original sources for all GPCR-CR from species other than L. chalumnae.|
|jezb22531-sm-0001-SupTab-S3.doc||30K||Table S3. Statistical verification of the T1R tree topology.|
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