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Figure S1. Prevalence of Campylobacter jejuni in mallard ducks and starlings. The graph describes the prevalence of C. jejuni in the fecal materials of mallard ducks and starlings during each sampling occasion and in each sampling site. CI in the figure refers to confidence interval.

Table S1. MLST allelic profiles, flaA, porA nucleotide alleles and their frequency in ducks.

Table S2. MLST allelic profiles, flaA, porA nucleotide alleles and their frequency in starlings.

Table S3. Clonal complexes, sequence types and their prevalence during summer in ducks (The months of spring and summer; September 2008–February 2009 were categorised as summer as these months are warmer during the year).

Table S4. Clonal complexes, sequence types and their prevalence during winter in ducks (The months of autumn and winter; March–July 2009 and August 2008 were categorised as winter as these months are cooler during the year).

Table S5. Clonal complexes, sequence types and their prevalence during summer in starlings.

Table S6. Clonal complexes, sequence types and their prevalence during winter in starlings.

Table S7. Analysis of molecular variance (AMOVA) Population pairwise FSTs for ducks and starlings at different sampling sites.

Table S8. flaA and porA typing.

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